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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000392.1-P
Bra004927.1-P
Bra009436.1-P
Bra010623.1-P
Bra010955.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra014454.1-P
Bra017638.1-P
Bra019221.1-P
Bra020600.1-P
Bra021470.1-P
Bra029347.1-P
Bra029424.1-P
Bra030032.1-P
Bra032814.1-P
Bra035952.1-P
Bra039170.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18960.1 Bra010955.1-P AT1G24260.2 9418042
AT4G18960.1 Bra030032.1-P AT1G24260.2 9418042
AT4G18960.1 Bra032814.1-P AT1G24260.2 9418042
AT4G18960.1 Bra009436.1-P AT1G46408.1 15805477
AT4G18960.1 Bra020600.1-P AT1G48150.1 15805477
AT4G18960.1 Bra000392.1-P AT2G45650.1 9418042
AT4G18960.1 Bra004927.1-P AT2G45650.1 9418042
AT4G18960.1 Bra021470.1-P AT3G02310.1 15604664
AT4G18960.1 Bra039170.1-P AT3G02310.1 15604664
AT4G18960.1 Bra021470.1-P AT3G02310.1 15805477
AT4G18960.1 Bra039170.1-P AT3G02310.1 15805477
AT4G18960.1 Bra021470.1-P AT3G02310.1 9418042
AT4G18960.1 Bra039170.1-P AT3G02310.1 9418042
AT4G18960.1 Bra011509.1-P AT3G57230.1 15805477
AT4G18960.1 Bra017638.1-P AT3G57230.1 15805477
AT4G18960.1 Bra014454.1-P AT3G61120.1 15805477
AT4G18960.1 Bra029424.1-P AT4G11880.1 15805477
AT4G18960.1 Bra012564.1-P AT4G18960.1 14555696
AT4G18960.1 Bra013364.1-P AT4G18960.1 14555696
AT4G18960.1 Bra019221.1-P AT4G24540.1 15805477
AT4G18960.1 Bra010623.1-P AT4G37940.1 15805477
AT4G18960.1 Bra011797.1-P AT4G37940.1 15805477
AT4G18960.1 Bra020600.1-P AT5G27130.1 15805477
AT4G18960.1 Bra012997.1-P AT5G60910.1 15805477
AT4G18960.1 Bra029347.1-P AT5G60910.1 15805477
AT4G18960.1 Bra035952.1-P AT5G60910.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98597 Canola nucleus 99.2 99.2
Bra013364.1-P Field mustard nucleus 94.02 93.65
AT4G18960.1 Thale cress nucleus 92.43 92.06
VIT_10s0003g02070.t01 Wine grape nucleus 66.93 74.34
KRH21150 Soybean nucleus 67.73 69.96
PGSC0003DMT400073134 Potato nucleus 66.93 67.74
Solyc02g071730.2.1 Tomato nucleus 66.53 67.34
KRH42930 Soybean nucleus 62.55 64.61
GSMUA_Achr10P... Banana nucleus 58.57 64.19
GSMUA_Achr5P06590_001 Banana nucleus 44.62 64.0
KRH59043 Soybean nucleus 61.75 63.79
Bra037895.1-P Field mustard nucleus 55.78 60.87
Bra000696.1-P Field mustard nucleus 54.18 58.87
Bra014552.1-P Field mustard nucleus 58.17 58.87
Bra007419.1-P Field mustard nucleus 56.97 58.37
Bra004716.1-P Field mustard nucleus 56.57 58.2
GSMUA_Achr6P14760_001 Banana nucleus 58.57 57.87
Zm00001d039434_P001 Maize nucleus 59.76 57.25
EES00105 Sorghum nucleus 61.35 57.25
TraesCS3D01G140200.2 Wheat nucleus 61.35 56.2
HORVU3Hr1G026650.1 Barley nucleus 60.16 55.72
TraesCS3A01G314300.1 Wheat nucleus 60.16 55.31
TraesCS1B01G144800.1 Wheat nucleus 58.96 55.02
TraesCS1D01G127700.1 Wheat nucleus 58.57 54.65
TraesCS1D01G262700.1 Wheat nucleus 54.18 54.4
TraesCS1A01G125800.1 Wheat nucleus 58.17 54.28
Os01t0201700-02 Rice nucleus 59.36 53.99
TraesCS1B01G273300.1 Wheat nucleus 54.18 53.33
Os05t0203800-02 Rice nucleus 57.37 52.94
Zm00001d042591_P002 Maize nucleus 56.18 52.61
EES01878 Sorghum nucleus 57.37 51.99
Os01t0886200-01 Rice nucleus 54.18 51.32
HORVU1Hr1G023620.1 Barley nucleus 51.0 50.79
TraesCS5B01G115100.1 Wheat nucleus 50.6 50.4
TraesCS5D01G118200.1 Wheat nucleus 50.6 50.4
TraesCS5A01G117500.1 Wheat nucleus 50.2 49.61
TraesCS1A01G262700.1 Wheat endoplasmic reticulum 53.78 49.09
TraesCS3B01G157500.4 Wheat nucleus 60.56 49.03
Bra003356.1-P Field mustard nucleus 52.99 48.72
OQU77603 Sorghum nucleus 56.18 48.29
Os12t0207000-01 Rice nucleus 51.79 48.15
GSMUA_Achr10P... Banana nucleus 60.96 47.96
Zm00001d023955_P003 Maize nucleus 49.8 47.17
EES15827 Sorghum nucleus 49.4 46.1
Zm00001d037737_P001 Maize nucleus 55.38 45.42
HORVU1Hr1G029220.1 Barley nucleus 58.57 45.09
Zm00001d041781_P001 Maize nucleus 50.2 43.9
Zm00001d008882_P001 Maize nucleus 55.78 42.55
Bra025411.1-P Field mustard nucleus 29.08 41.48
Bra004361.1-P Field mustard nucleus 28.29 37.57
Bra010955.1-P Field mustard nucleus 35.46 36.48
Bra008674.1-P Field mustard nucleus 35.86 35.71
Bra030222.1-P Field mustard nucleus 32.27 35.68
Bra010623.1-P Field mustard nucleus 30.28 35.51
Bra029347.1-P Field mustard nucleus 33.86 35.42
Bra039170.1-P Field mustard nucleus 35.06 35.2
Bra021470.1-P Field mustard nucleus 35.06 34.92
Bra030032.1-P Field mustard nucleus 35.06 34.92
Bra039921.1-P Field mustard nucleus 31.47 34.8
Bra032814.1-P Field mustard nucleus 35.06 34.78
Bra011797.1-P Field mustard nucleus 31.47 34.65
Bra017638.1-P Field mustard nucleus 33.07 34.58
Bra035952.1-P Field mustard nucleus 33.07 34.44
Bra006322.1-P Field mustard nucleus 34.26 34.4
Bra012997.1-P Field mustard nucleus 32.67 34.02
Bra004927.1-P Field mustard nucleus 32.67 33.88
Bra014454.1-P Field mustard nucleus 30.68 33.48
Bra025126.1-P Field mustard nucleus 34.26 33.46
Bra000392.1-P Field mustard nucleus 33.86 33.07
Bra026543.1-P Field mustard nucleus 35.06 32.71
Bra011021.1-P Field mustard nucleus 32.67 32.28
Bra038326.1-P Field mustard nucleus 31.87 31.25
Bra036201.1-P Field mustard nucleus 29.88 30.24
Bra017376.1-P Field mustard nucleus 29.08 30.04
Bra004007.1-P Field mustard nucleus 30.68 28.41
Bra011509.1-P Field mustard nucleus 30.28 26.21
Bra040719.1-P Field mustard nucleus 16.33 24.12
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ProteinID:AAN78325ProteinID:AAN78325.1EMBL:AY162471EnsemblPlantsGene:Bra012564
EnsemblPlants:Bra012564.1EnsemblPlants:Bra012564.1-Pncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100
InterPro:IPR002487InterPro:IPR036879UniProt:M4D7V4InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF187
SMART:SM00432SUPFAM:SSF55455InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI00025403D5
SEG:seg:::::
Description
AT4G18960 (E=1e-110) AG | AG (AGAMOUS); DNA binding / transcription factor
Coordinates
chrA03:+:23526452..23530429
Molecular Weight (calculated)
28775.1 Da
IEP (calculated)
10.010
GRAVY (calculated)
-0.918
Length
251 amino acids
Sequence
(BLAST)
001: MAYQMELGGD SSPQRKSAGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV TLIVFSSRGR LYEYSNNSVK GTIERYKKAI SDNTNTGTVA
101: EINGQYYQQE SAKLRQQIIS IQNSNRQLMG ETIGSMSPKE LRNLEGRLDR SINRIRSKKN ELLFAEIDYM QKREVDLHSE NQRLRAKIAE NERNNPSMNL
201: MPGGYEQTMQ PPQTQSQPFD SRNYFQVAAL QPNNHHYSSA GRQDQTALQL V
Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.