Factsheet for Bra025126.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004928.1-P
Bra009436.1-P
Bra009911.1-P
Bra012997.1-P
Bra015643.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra029347.1-P
Bra035952.1-P
Bra038326.1-P
Bra039324.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Bra009911.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra009911.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra009436.1-P	AT1G46408.1	15805477
AT2G03710.1	Bra020600.1-P	AT1G48150.1	15805477
AT2G03710.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra015643.1-P	AT1G77980.1	15805477
AT2G03710.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G03710.1	Bra012997.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra029347.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra035952.1-P	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51202	Canola	nucleus	98.83	98.83
Bra017376.1-P	Field mustard	nucleus	80.16	84.77
AT2G03710.1	Thale cress	nucleus	84.82	84.5
Bra026543.1-P	Field mustard	nucleus	87.16	83.27
TraesCS7B01G020900.1	Wheat	nucleus	21.4	79.71
TraesCS7B01G021100.1	Wheat	nucleus	20.23	78.79
VIT_01s0011g00110.t01	Wine grape	nucleus	58.75	62.14
KRH70973	Soybean	nucleus	55.25	58.2
Solyc04g005320.2.1	Tomato	nucleus	53.7	57.98
KRH75123	Soybean	nucleus	54.09	56.5
Bra008674.1-P	Field mustard	nucleus	55.25	56.35
Bra006322.1-P	Field mustard	nucleus	54.47	56.0
PGSC0003DMT400072891	Potato	nucleus	52.53	55.79
Solyc05g012020.2.1	Tomato	nucleus	52.14	55.37
GSMUA_Achr8P28100_001	Banana	nucleus	49.81	53.33
Bra039170.1-P	Field mustard	nucleus	51.36	52.8
Bra021470.1-P	Field mustard	nucleus	51.75	52.78
Bra030032.1-P	Field mustard	nucleus	49.81	50.79
Zm00001d045231_P002	Maize	nucleus	43.97	50.22
Bra010955.1-P	Field mustard	nucleus	47.47	50.0
GSMUA_Achr3P15930_001	Banana	nucleus	46.69	50.0
GSMUA_Achr7P26700_001	Banana	nucleus	46.3	50.0
EER89250	Sorghum	nucleus	43.58	49.78
Bra032814.1-P	Field mustard	nucleus	48.25	49.01
TraesCS4B01G245700.1	Wheat	nucleus	40.86	48.61
TraesCS7D01G120500.1	Wheat	nucleus	42.8	48.46
Os06t0162800-01	Rice	nucleus	42.41	48.44
GSMUA_Achr4P14460_001	Banana	nucleus	45.14	48.33
GSMUA_Achr2P06250_001	Banana	nucleus	42.41	48.23
OQU93000	Sorghum	nucleus	45.53	48.15
TraesCS7A01G122100.1	Wheat	nucleus	42.02	47.58
TraesCS7B01G020800.1	Wheat	nucleus	42.02	47.58
TraesCS7A01G122000.1	Wheat	nucleus	41.25	46.7
Os03t0215400-01	Rice	nucleus	46.69	46.69
TraesCS4D01G243700.1	Wheat	nucleus	40.86	46.67
TraesCS7D01G120600.1	Wheat	nucleus	40.47	45.81
Bra004361.1-P	Field mustard	nucleus	33.46	45.5
TraesCS4A01G028200.1	Wheat	nucleus	40.86	45.26
Zm00001d048082_P001	Maize	nucleus	44.36	45.24
Zm00001d028217_P001	Maize	nucleus	44.75	44.57
Bra025411.1-P	Field mustard	nucleus	30.35	44.32
TraesCS4D01G276100.1	Wheat	nucleus	41.25	43.98
TraesCS4D01G245200.1	Wheat	nucleus	42.02	43.55
TraesCS4A01G028100.1	Wheat	nucleus	40.86	43.39
TraesCS4B01G245800.1	Wheat	nucleus	41.63	43.32
TraesCS4A01G058900.1	Wheat	nucleus	27.63	41.76
TraesCS4B01G277800.1	Wheat	nucleus	40.08	41.7
Bra004927.1-P	Field mustard	nucleus	38.91	41.32
HORVU7Hr1G025700.6	Barley	nucleus	42.8	39.86
Bra014454.1-P	Field mustard	nucleus	33.46	37.39
Bra000392.1-P	Field mustard	nucleus	37.35	37.35
Bra038326.1-P	Field mustard	nucleus	36.97	37.11
Bra011021.1-P	Field mustard	nucleus	36.58	37.01
Bra012997.1-P	Field mustard	nucleus	33.85	36.1
Bra035952.1-P	Field mustard	nucleus	33.85	36.1
Bra036201.1-P	Field mustard	nucleus	34.63	35.89
Bra029347.1-P	Field mustard	nucleus	33.46	35.83
HORVU4Hr1G067680.14	Barley	nucleus	39.3	35.56
Bra037895.1-P	Field mustard	nucleus	31.52	35.22
Bra000696.1-P	Field mustard	nucleus	31.52	35.06
Bra004007.1-P	Field mustard	nucleus	36.58	34.69
Bra013364.1-P	Field mustard	nucleus	33.85	34.52
Bra012564.1-P	Field mustard	nucleus	33.46	34.26
Bra007419.1-P	Field mustard	nucleus	31.91	33.47
Bra004716.1-P	Field mustard	nucleus	31.52	33.2
Bra010623.1-P	Field mustard	nucleus	27.63	33.18
Bra030222.1-P	Field mustard	nucleus	28.79	32.6
TraesCS7B01G021000.1	Wheat	nucleus	23.35	32.09
TraesCS4A01G078700.1	Wheat	nucleus	27.24	31.96
Bra011797.1-P	Field mustard	nucleus	28.02	31.58
Bra014552.1-P	Field mustard	nucleus	30.35	31.45
Bra039921.1-P	Field mustard	nucleus	27.63	31.28
Bra017638.1-P	Field mustard	nucleus	28.4	30.42
Bra003356.1-P	Field mustard	nucleus	30.35	28.57
Bra011509.1-P	Field mustard	nucleus	26.85	23.79
Bra040719.1-P	Field mustard	nucleus	14.4	21.76

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra025126	EnsemblPlants:Bra025126.1	EnsemblPlants:Bra025126.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4E8M0
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF352	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000253F7FC	SEG:seg	:	:

Description

AT2G03710 (E=2e-114) SEP4, AGL3 | SEP4 (SEPALLATA 4); DNA binding / transcription factor

Coordinates

chrA06:-:23321998..23324112

Molecular Weight (calculated)

29410.0 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.715

Length

257 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLIFSN RGKLYEFCSS PSGMAKMVEK YRKHSYATMD PNQSAKDLQE RYQDYLNLKS
101: RVEVLQHSQR HLLGEEIAWM GVDELEQLER QVDTSLRQIR STKARSMLDQ LSDLKSKEEM LLETNRDLKR KLEESDATLN QTLWGASSSA EHSQQQQQEG
201: MTSYHANPLS QEVGFFRPLQ GNVALQMSHY NPGMPNASNS ATTSQNVING FFPGWMV

Best Arabidopsis Sequence Match ( AT2G03710.2 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.