Factsheet for GSMUA_Achr4P14460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03630_001
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P11820_001
GSMUA_Achr2P12680_001
GSMUA_Achr2P13650_001
GSMUA_Achr2P18400_001
GSMUA_Achr2P18410_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P04450_001
GSMUA_Achr3P05500_001
GSMUA_Achr3P08500_001
GSMUA_Achr3P24560_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P25390_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P22570_001
GSMUA_Achr4P23540_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P10250_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P04330_001
GSMUA_Achr8P06150_001
GSMUA_Achr9P13010_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	GSMUA_Achr2P18400_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr2P18410_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P05500_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P08500_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P24560_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr8P06150_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_AchrUn_...	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr2P18400_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr2P18410_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P05500_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P08500_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P24560_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr8P06150_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_AchrUn_...	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr10P...	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr2P13650_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P02280_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P25280_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P30440_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr4P23540_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr6P00050_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr7P00460_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr8P04330_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P04450_001	AT1G77980.1	15805477
AT2G03710.1	GSMUA_Achr9P13010_001	AT1G77980.1	15805477
AT2G03710.1	GSMUA_Achr1P03630_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr2P11820_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr5P10250_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr10P...	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr2P13650_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P02280_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P25280_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P30440_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr4P23540_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr6P00050_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr7P00460_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr8P04330_001	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G021100.1	Wheat	nucleus	20.83	75.76
TraesCS7B01G020900.1	Wheat	nucleus	20.83	72.46
GSMUA_Achr7P26700_001	Banana	nucleus	63.75	64.29
Zm00001d045231_P002	Maize	nucleus	53.33	56.89
EER89250	Sorghum	nucleus	52.92	56.44
VIT_17s0000g05000.t01	Wine grape	nucleus	56.25	54.88
TraesCS4B01G245700.1	Wheat	nucleus	49.17	54.63
GSMUA_Achr11P...	Banana	nucleus	53.33	54.47
Os06t0162800-01	Rice	nucleus	50.83	54.22
GSMUA_Achr8P28100_001	Banana	nucleus	53.75	53.75
GSMUA_Achr9P01370_001	Banana	nucleus	54.17	53.5
OQU93000	Sorghum	nucleus	54.17	53.5
TraesCS7D01G120500.1	Wheat	nucleus	50.42	53.3
Solyc03g114840.2.1	Tomato	nucleus	54.58	53.25
GSMUA_Achr2P06250_001	Banana	nucleus	50.0	53.1
TraesCS7A01G122100.1	Wheat	nucleus	50.0	52.86
TraesCS7A01G122000.1	Wheat	nucleus	50.0	52.86
PGSC0003DMT400063315	Potato	nucleus	54.17	52.85
TraesCS7B01G020800.1	Wheat	nucleus	49.58	52.42
GSMUA_Achr3P15930_001	Banana	nucleus	52.08	52.08
TraesCS4D01G243700.1	Wheat	nucleus	48.75	52.0
Os03t0215400-01	Rice	nucleus	55.0	51.36
KRH70973	Soybean	nucleus	52.08	51.23
KRH75123	Soybean	nucleus	52.5	51.22
TraesCS4A01G028200.1	Wheat	nucleus	49.17	50.86
Zm00001d048082_P001	Maize	nucleus	53.33	50.79
TraesCS7D01G120600.1	Wheat	nucleus	47.92	50.66
TraesCS4D01G276100.1	Wheat	nucleus	50.0	49.79
Zm00001d028217_P001	Maize	nucleus	53.33	49.61
TraesCS4A01G028100.1	Wheat	nucleus	49.58	49.17
TraesCS4B01G245800.1	Wheat	nucleus	50.42	48.99
TraesCS4D01G245200.1	Wheat	nucleus	50.42	48.79
GSMUA_Achr4P30120_001	Banana	nucleus	47.08	48.09
TraesCS4B01G277800.1	Wheat	nucleus	49.17	47.77
GSMUA_Achr1P00750_001	Banana	nucleus	47.5	47.11
TraesCS4A01G058900.1	Wheat	nucleus	33.33	47.06
GSMUA_Achr2P10250_001	Banana	nucleus	47.08	46.69
GSMUA_Achr2P04350_001	Banana	nucleus	45.83	45.83
Bra025126.1-P	Field mustard	nucleus	48.33	45.14
GSMUA_Achr1P24060_001	Banana	nucleus	45.83	45.08
CDY02978	Canola	nucleus	47.92	44.92
CDY51202	Canola	nucleus	47.92	44.75
AT2G03710.1	Thale cress	nucleus	47.92	44.57
GSMUA_Achr5P06590_001	Banana	nucleus	32.5	44.57
Bra026543.1-P	Field mustard	nucleus	49.58	44.24
HORVU7Hr1G025700.6	Barley	nucleus	50.83	44.2
CDY04164	Canola	nucleus	47.5	44.19
GSMUA_Achr2P13650_001	Banana	nucleus	45.0	43.9
GSMUA_Achr6P00050_001	Banana	nucleus	43.75	43.39
GSMUA_Achr9P29310_001	Banana	nucleus	28.75	42.07
GSMUA_Achr7P00460_001	Banana	nucleus	43.75	42.0
GSMUA_Achr3P02280_001	Banana	nucleus	45.83	41.83
GSMUA_Achr4P23540_001	Banana	nucleus	42.92	41.53
GSMUA_Achr10P...	Banana	nucleus	38.33	40.17
GSMUA_Achr10P...	Banana	nucleus	38.75	39.74
GSMUA_Achr3P30440_001	Banana	nucleus	37.5	39.13
Bra017376.1-P	Field mustard	nucleus	39.58	39.09
TraesCS7B01G021000.1	Wheat	nucleus	30.42	39.04
GSMUA_Achr10P...	Banana	nucleus	19.17	38.98
GSMUA_Achr10P...	Banana	nucleus	46.25	38.95
GSMUA_Achr6P06040_001	Banana	nucleus	37.5	38.14
GSMUA_Achr8P04330_001	Banana	nucleus	38.75	37.96
GSMUA_Achr7P23690_001	Banana	nucleus	37.5	37.66
HORVU4Hr1G067680.14	Barley	nucleus	44.17	37.32
CDY33113	Canola	nucleus	47.92	37.22
TraesCS4A01G078700.1	Wheat	nucleus	33.75	36.99
GSMUA_Achr6P14760_001	Banana	nucleus	37.08	35.04
CDY45709	Canola	nucleus	25.0	34.68
CDY49686	Canola	nucleus	24.58	34.1
GSMUA_Achr3P25280_001	Banana	nucleus	37.08	33.46
GSMUA_Achr3P20280_001	Banana	nucleus	32.08	32.63
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	37.92	32.04
GSMUA_Achr3P07310_001	Banana	nucleus	32.08	31.56
GSMUA_Achr7P12610_001	Banana	nucleus	30.83	31.49
GSMUA_Achr5P24560_001	Banana	nucleus	30.83	31.36
GSMUA_Achr9P15540_001	Banana	nucleus	31.67	31.02
GSMUA_Achr10P...	Banana	nucleus	37.5	28.21

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr4G14460_001
EnsemblPlants:GSMUA_Achr4P14460_001	EnsemblPlants:GSMUA_Achr4T14460_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0SNW1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF274	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000295791E	:	:	:	:

Description

MADS-box transcription factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G14460_001]

Coordinates

chr4:+:10807223..10814554

Molecular Weight (calculated)

27283.7 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.683

Length

240 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVS FAKRRCGLLK KAHELSVLCD AEVALIVFSA HGRLFEFCST SSMLKILERY QMFRNNAESI PTLSEAQNSY QEYLKMKARI
101: EYLQRSQSNL LGEELGPLSI NELERLENQI EVSIKQIRSK KMQLMLDQLY DLKDKEQELQ KDNKNLRRKL QEGGSQTQLQ PSWPDGGNSA AKKPPRAEGL
201: LQLLEYDPAL QVGSSQSCTA PSNDGEGAAR DDDGLIPRWL

Best Arabidopsis Sequence Match ( AT3G02310.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP
201: QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML

Arabidopsis Description

SEP2SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.