Factsheet for PGSC0003DMT400063315

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114840.2.1	Tomato	nucleus	97.15	97.15
TraesCS7B01G021100.1	Wheat	nucleus	21.14	78.79
TraesCS7B01G020900.1	Wheat	nucleus	21.54	76.81
VIT_17s0000g05000.t01	Wine grape	nucleus	66.67	66.67
PGSC0003DMT400072891	Potato	nucleus	61.38	62.4
GSMUA_Achr8P28100_001	Banana	nucleus	59.76	61.25
PGSC0003DMT400003483	Potato	nucleus	60.16	60.16
PGSC0003DMT400056363	Potato	nucleus	58.54	59.75
Zm00001d045231_P002	Maize	nucleus	54.06	59.11
GSMUA_Achr2P06250_001	Banana	nucleus	54.06	58.85
EER89250	Sorghum	nucleus	53.25	58.22
TraesCS7B01G020800.1	Wheat	nucleus	51.63	55.95
TraesCS7D01G120500.1	Wheat	nucleus	51.63	55.95
GSMUA_Achr3P15930_001	Banana	nucleus	54.47	55.83
TraesCS4B01G245700.1	Wheat	nucleus	48.78	55.56
TraesCS7A01G122000.1	Wheat	nucleus	51.22	55.51
Os06t0162800-01	Rice	nucleus	50.41	55.11
TraesCS7A01G122100.1	Wheat	nucleus	50.81	55.07
GSMUA_Achr7P26700_001	Banana	nucleus	53.25	55.04
GSMUA_Achr4P14460_001	Banana	nucleus	52.85	54.17
TraesCS4D01G243700.1	Wheat	nucleus	49.19	53.78
PGSC0003DMT400004875	Potato	nucleus	40.24	52.66
OQU93000	Sorghum	nucleus	51.63	52.26
Os03t0215400-01	Rice	nucleus	54.47	52.14
TraesCS4B01G245800.1	Wheat	nucleus	50.81	50.61
TraesCS4D01G245200.1	Wheat	nucleus	50.81	50.4
TraesCS7D01G120600.1	Wheat	nucleus	46.34	50.22
Zm00001d028217_P001	Maize	nucleus	51.63	49.22
Zm00001d048082_P001	Maize	nucleus	50.41	49.21
TraesCS4A01G028200.1	Wheat	nucleus	45.94	48.71
TraesCS4A01G058900.1	Wheat	nucleus	33.33	48.24
TraesCS4D01G276100.1	Wheat	nucleus	47.15	48.13
TraesCS4A01G028100.1	Wheat	nucleus	46.75	47.52
PGSC0003DMT400000383	Potato	nucleus	48.78	47.06
TraesCS4B01G277800.1	Wheat	nucleus	45.94	45.75
HORVU7Hr1G025700.6	Barley	nucleus	50.81	45.29
PGSC0003DMT400010451	Potato	nucleus	44.31	43.6
PGSC0003DMT400063313	Potato	nucleus	43.9	43.55
PGSC0003DMT400068325	Potato	nucleus	40.65	42.73
PGSC0003DMT400003485	Potato	nucleus	41.87	41.7
PGSC0003DMT400072888	Potato	nucleus	40.65	40.98
TraesCS4A01G078700.1	Wheat	nucleus	36.18	40.64
PGSC0003DMT400065614	Potato	nucleus	36.59	38.79
PGSC0003DMT400013248	Potato	nucleus	36.59	38.79
HORVU4Hr1G067680.14	Barley	nucleus	44.72	38.73
PGSC0003DMT400039313	Potato	nucleus	30.49	37.5
TraesCS7B01G021000.1	Wheat	nucleus	28.46	37.43
PGSC0003DMT400073134	Potato	nucleus	36.18	35.89
PGSC0003DMT400044552	Potato	nucleus	32.11	31.1
PGSC0003DMT400024193	Potato	nucleus	17.07	23.46
PGSC0003DMT400005159	Potato	nucleus	17.48	20.28

Protein Annotations

EntrezGene:102583376	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M1CAG7	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400024626	PGSC:PGSC0003DMG400024626	EnsemblPlants:PGSC0003DMT400063315	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF274	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002961DA7	RefSeq:XP_006345102.1	SEG:seg

Description

MADS-box protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024626]

Coordinates

chr3:-:54796515..54801975

Molecular Weight (calculated)

28412.9 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.661

Length

246 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST SSMVKTIEKY QRCSYATLEA NQSVTETQNN YHEYLRLKAR
101: VELLQRSQRN FLGEDLGTLN TKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQKEQML AESNRLLRRK LEESAAGFPL RLCWEDGAEH QAMHQQNRLP
201: NTEGFFQPLG LHSSSPHFGY NPVNTDEVNA AATAHNMNGF IHGWML

Best Arabidopsis Sequence Match ( AT2G03710.1 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.