Factsheet for PGSC0003DMT400063313

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400000383
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400024247
PGSC0003DMT400026576
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400069515
PGSC0003DMT400070437
PGSC0003DMT400072891
PGSC0003DMT400073134
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60910.1	PGSC0003DMT400072891	AT2G03710.1	15805477
AT5G60910.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT5G60910.1	PGSC0003DMT400000383	AT2G45650.1	15805477
AT5G60910.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT5G60910.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT5G60910.1	PGSC0003DMT400000028	AT2G45660.1	21798944
AT5G60910.1	PGSC0003DMT400026576	AT2G45660.1	21798944
AT5G60910.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G60910.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G60910.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G60910.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G60910.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT5G60910.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT5G60910.1	PGSC0003DMT400073134	AT4G18960.1	15805477
AT5G60910.1	PGSC0003DMT400024247	AT4G24540.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114830.2.1	Tomato	nucleus	95.97	96.36
PGSC0003DMT400010451	Potato	nucleus	80.24	79.6
KRH54740	Soybean	nucleus	64.11	65.16
VIT_17s0000g04990.t01	Wine grape	nucleus	63.31	64.61
KRH63171	Soybean	nucleus	63.31	64.34
AT5G60910.1	Thale cress	nucleus	61.69	63.22
Bra029347.1-P	Field mustard	nucleus	60.89	62.92
CDY42841	Canola	nucleus	60.89	62.92
CDY47002	Canola	nucleus	60.89	62.66
Bra035952.1-P	Field mustard	nucleus	60.08	61.83
CDY16832	Canola	nucleus	60.08	61.83
CDY58690	Canola	nucleus	60.08	61.83
CDY02185	Canola	nucleus	59.68	61.41
Bra012997.1-P	Field mustard	nucleus	59.27	61.0
PGSC0003DMT400072888	Potato	nucleus	58.47	59.43
PGSC0003DMT400068325	Potato	nucleus	55.24	58.55
EER90862	Sorghum	nucleus	57.66	58.37
PGSC0003DMT400003485	Potato	nucleus	58.06	58.3
GSMUA_Achr2P13650_001	Banana	nucleus	57.66	58.13
TraesCS5A01G391700.1	Wheat	nucleus	56.85	57.79
GSMUA_Achr4P23540_001	Banana	nucleus	56.85	56.85
GSMUA_Achr6P00050_001	Banana	nucleus	55.24	56.61
TraesCS5B01G396600.2	Wheat	nucleus	56.45	55.78
Os03t0752800-02	Rice	nucleus	55.24	55.69
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	56.85	55.51
GSMUA_Achr7P00460_001	Banana	nucleus	54.84	54.4
GSMUA_Achr8P04330_001	Banana	nucleus	53.63	54.29
EER97510	Sorghum	nucleus	54.44	53.36
Zm00001d022088_P004	Maize	nucleus	54.84	52.71
TraesCS2D01G262700.1	Wheat	nucleus	56.85	52.03
EER95753	Sorghum	nucleus	56.45	51.85
Os07t0605200-01	Rice	nucleus	52.02	51.81
Os07t0108900-02	Rice	nucleus	55.65	51.69
Zm00001d018667_P003	Maize	nucleus	56.45	51.66
GSMUA_Achr10P...	Banana	nucleus	59.27	51.58
TraesCS2B01G281000.1	Wheat	nucleus	56.85	51.46
TraesCS2A01G261200.2	Wheat	nucleus	56.85	51.46
Zm00001d013259_P002	Maize	nucleus	57.26	50.9
GSMUA_Achr3P02280_001	Banana	nucleus	53.63	50.57
GSMUA_Achr3P30440_001	Banana	nucleus	46.37	50.0
TraesCS2D01G181400.3	Wheat	nucleus	51.61	47.94
TraesCS2B01G200800.1	Wheat	nucleus	51.61	47.94
TraesCS2A01G174300.3	Wheat	nucleus	51.61	47.94
Zm00001d034045_P003	Maize	nucleus	56.05	47.77
GSMUA_Achr3P25280_001	Banana	nucleus	50.4	46.99
Zm00001d007949_P001	Maize	nucleus	56.85	46.23
HORVU2Hr1G063800.7	Barley	nucleus, plastid	56.85	46.08
HORVU5Hr1G095630.3	Barley	nucleus, plastid	56.05	45.28
PGSC0003DMT400063315	Potato	nucleus	43.55	43.9
PGSC0003DMT400056363	Potato	nucleus	41.94	43.15
PGSC0003DMT400003483	Potato	nucleus	42.74	43.09
PGSC0003DMT400072891	Potato	nucleus	41.13	42.15
PGSC0003DMT400000383	Potato	nucleus	42.34	41.18
Os12t0501700-00	Rice	nucleus	37.1	39.48
PGSC0003DMT400039313	Potato	nucleus	31.45	39.0
PGSC0003DMT400004875	Potato	nucleus	29.44	38.83
KXG23502	Sorghum	nucleus	34.27	38.12
Zm00001d023736_P001	Maize	nucleus	35.89	34.63
PGSC0003DMT400013248	Potato	nucleus	29.84	31.9
PGSC0003DMT400065614	Potato	nucleus	29.84	31.9
PGSC0003DMT400073134	Potato	nucleus	31.05	31.05
PGSC0003DMT400044552	Potato	nucleus	31.05	30.32
PGSC0003DMT400024193	Potato	nucleus	17.74	24.58
PGSC0003DMT400005159	Potato	nucleus	18.55	21.7

Protein Annotations

EntrezGene:102583048	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAX35676	ProteinID:AAX35676.1	EMBL:AY935538
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
UniProt:M1CAG6	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400024625	PGSC:PGSC0003DMG400024625
EnsemblPlants:PGSC0003DMT400063313	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF155	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00029543CE	RefSeq:XP_006345101.1	:	:	:	:

Description

MADS box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024625]

Coordinates

chr3:-:54779384..54786641

Molecular Weight (calculated)

28729.0 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.948

Length

248 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD SCMERILERY ERYSYAERQL NAATDIETPG SWTLEHAKLK
101: ARLEVLQRNQ KHYAGEELNT LSMKEFQNLE HQLDSALKHI RSRKNQLMHE SISALQKKDK ALQEQNNNLS KQVKEREKEM SQQTPWEQQS HDHLNSSSFV
201: LPHPFNNLHM GEAYPTAGDN GEVEGSSRQQ QQNTSSVMPP WMLRHLNG

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.