Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90862 | Sorghum | nucleus | 83.87 | 95.51 |
| KRH75125 | Soybean | nucleus | 20.43 | 93.44 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 72.76 | 83.2 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 72.04 | 80.08 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 72.04 | 79.13 |
| Os03t0752800-02 | Rice | nucleus | 67.03 | 76.02 |
| Zm00001d034045_P003 | Maize | nucleus | 78.49 | 75.26 |
| Zm00001d018667_P003 | Maize | nucleus | 63.8 | 65.68 |
| Bra004361.1-P | Field mustard | nucleus | 43.73 | 64.55 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 70.97 | 64.5 |
| CDY19977 | Canola | nucleus | 23.3 | 63.73 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 53.41 | 61.83 |
| Zm00001d007949_P001 | Maize | nucleus | 65.23 | 59.67 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 51.61 | 59.26 |
| KRH07467 | Soybean | nucleus | 49.82 | 58.9 |
| KRH45412 | Soybean | nucleus | 49.46 | 58.47 |
| Solyc03g114830.2.1 | Tomato | nucleus | 51.61 | 58.3 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 50.9 | 57.49 |
| PGSC0003DMT400063313 | Potato | nucleus | 50.9 | 57.26 |
| CDY36077 | Canola | nucleus | 45.16 | 57.01 |
| Bra025411.1-P | Field mustard | nucleus | 35.84 | 56.82 |
| KRH70974 | Soybean | nucleus | 49.46 | 56.79 |
| CDY34564 | Canola | nucleus | 44.09 | 56.42 |
| Solyc06g069430.2.1 | Tomato | nucleus | 49.46 | 56.33 |
| KRH63171 | Soybean | nucleus | 49.1 | 56.15 |
| PGSC0003DMT400010451 | Potato | nucleus | 49.46 | 55.2 |
| KRH54740 | Soybean | nucleus | 48.03 | 54.92 |
| PGSC0003DMT400072888 | Potato | nucleus | 47.67 | 54.51 |
| Solyc05g056620.1.1 | Tomato | nucleus | 47.31 | 54.1 |
| AT1G69120.1 | Thale cress | nucleus | 49.46 | 53.91 |
| KRH03173 | Soybean | nucleus | 45.52 | 53.14 |
| CDY65811 | Canola | nucleus | 48.75 | 53.12 |
| Bra038326.1-P | Field mustard | nucleus | 48.75 | 53.12 |
| CDX95960 | Canola | nucleus | 48.75 | 53.12 |
| Zm00001d022088_P004 | Maize | nucleus | 49.1 | 53.1 |
| CDY58690 | Canola | nucleus | 45.52 | 52.7 |
| CDY33554 | Canola | nucleus | 48.03 | 52.34 |
| CDY02185 | Canola | nucleus | 45.16 | 52.28 |
| Bra029347.1-P | Field mustard | nucleus | 44.8 | 52.08 |
| CDY42841 | Canola | nucleus | 44.8 | 52.08 |
| AT5G60910.1 | Thale cress | nucleus | 45.16 | 52.07 |
| Bra012997.1-P | Field mustard | nucleus | 44.8 | 51.87 |
| AT1G26310.1 | Thale cress | nucleus | 47.31 | 51.76 |
| CDY47002 | Canola | nucleus | 44.44 | 51.45 |
| PGSC0003DMT400068325 | Potato | nucleus | 43.01 | 51.28 |
| KRH56774 | Soybean | nucleus | 44.8 | 51.23 |
| Solyc02g089210.2.1 | Tomato | nucleus | 45.88 | 51.2 |
| Bra011021.1-P | Field mustard | nucleus | 46.59 | 51.18 |
| Bra035952.1-P | Field mustard | nucleus | 44.09 | 51.04 |
| CDY16832 | Canola | nucleus | 44.09 | 51.04 |
| PGSC0003DMT400003485 | Potato | nucleus | 44.8 | 50.61 |
| Solyc02g065730.1.1 | Tomato | nucleus | 41.58 | 49.57 |
| Zm00001d003409_P001 | Maize | nucleus | 15.41 | 49.43 |
| Bra004007.1-P | Field mustard | nucleus | 47.31 | 48.71 |
| KRH45099 | Soybean | nucleus | 43.01 | 48.39 |
| CDY04265 | Canola | nucleus | 48.03 | 48.38 |
| KRG93701 | Soybean | nucleus | 42.29 | 48.36 |
| KRH18331 | Soybean | nucleus | 40.86 | 46.72 |
| CDY07357 | Canola | nucleus | 48.39 | 46.71 |
| Zm00001d045231_P002 | Maize | nucleus | 37.63 | 46.67 |
| KRH01382 | Soybean | nucleus | 41.94 | 46.25 |
| AT3G30260.1 | Thale cress | nucleus | 39.07 | 43.78 |
| Zm00001d034047_P007 | Maize | nucleus | 37.63 | 43.75 |
| Bra036201.1-P | Field mustard | nucleus | 38.71 | 43.55 |
| CDY00082 | Canola | nucleus | 38.71 | 43.55 |
| CDX86353 | Canola | nucleus | 38.71 | 43.37 |
| Zm00001d021057_P001 | Maize | nucleus | 38.35 | 43.32 |
| Zm00001d031620_P001 | Maize | nucleus | 39.43 | 43.14 |
| Zm00001d006094_P001 | Maize | nucleus | 38.71 | 43.03 |
| CDY45899 | Canola | nucleus | 37.99 | 42.57 |
| Zm00001d048082_P001 | Maize | nucleus | 36.56 | 40.48 |
| Zm00001d045227_P001 | Maize | nucleus | 19.0 | 39.26 |
| Zm00001d028217_P001 | Maize | nucleus | 36.2 | 39.15 |
| Zm00001d023736_P001 | Maize | nucleus | 34.77 | 37.74 |
| Zm00001d051465_P002 | Maize | nucleus | 38.71 | 36.86 |
| Zm00001d017932_P002 | Maize | nucleus | 29.39 | 34.75 |
| Zm00001d016957_P003 | Maize | nucleus | 29.39 | 34.17 |
| CDX85287 | Canola | nucleus | 21.15 | 31.55 |
| Zm00001d023955_P003 | Maize | nucleus | 29.39 | 30.94 |
| Zm00001d017614_P003 | Maize | nucleus | 30.47 | 30.69 |
| Zm00001d042591_P002 | Maize | nucleus | 29.03 | 30.22 |
| Zm00001d039434_P001 | Maize | nucleus | 28.32 | 30.15 |
| CDY35780 | Canola | nucleus | 20.79 | 29.44 |
| Zm00001d041781_P001 | Maize | nucleus | 30.11 | 29.27 |
| Zm00001d050897_P002 | Maize | nucleus | 30.82 | 27.22 |
| Zm00001d037737_P001 | Maize | nucleus | 27.24 | 24.84 |
| Zm00001d008882_P001 | Maize | nucleus | 26.52 | 22.49 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:542032 | UniProt:A0A1D6GGX0 | ProteinID:AQK62786.1 | ProteinID:AQK62789.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF275 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0008455B9A | EnsemblPlantsGene:Zm00001d013259 | EnsemblPlants:Zm00001d013259_P002 | EnsemblPlants:Zm00001d013259_T002 |
| SEG:seg | : | : | : | : | : |
Description
Zea mays MADS-box 15 Zea mays MADS-box 15
Coordinates
chr5:+:7240613..7258833
Molecular Weight (calculated)
32007.5 Da
IEP (calculated)
10.142
GRAVY (calculated)
-0.615
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYSTD SCMDKILDRY ERYSYAEKVL ISAESETQQP IRSHEYFIWA
101: SKKVSYASVW SSSRRAAFGA WLGNWCHEYR KLKAKVETIQ KCQKHLMGED LETLNLKELQ QLEQQLESSL KHIRTRKNQL MLESISELQR KEKSLQEENK
201: VLQKELAEKQ KAQRKQVQWG QTQQQTSSSS SCFVIREAAP TTNISIFPVA AGGRLVEGAA AQPQARVGLP PWMLSHLSS
101: SKKVSYASVW SSSRRAAFGA WLGNWCHEYR KLKAKVETIQ KCQKHLMGED LETLNLKELQ QLEQQLESSL KHIRTRKNQL MLESISELQR KEKSLQEENK
201: VLQKELAEKQ KAQRKQVQWG QTQQQTSSSS SCFVIREAAP TTNISIFPVA AGGRLVEGAA AQPQARVGLP PWMLSHLSS
001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
Arabidopsis Description
CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.