Factsheet for Zm00001d045227_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11093	Soybean	nucleus	41.48	74.67
CDY72391	Canola	nucleus	40.74	73.33
CDX79856	Canola	nucleus	40.74	61.8
Zm00001d003409_P001	Maize	nucleus	31.85	49.43
Zm00001d039434_P001	Maize	nucleus	54.81	28.24
Zm00001d045231_P002	Maize	nucleus	40.74	24.44
Zm00001d021057_P001	Maize	nucleus	42.96	23.48
Zm00001d031620_P001	Maize	nucleus	42.22	22.35
Zm00001d023955_P003	Maize	nucleus	43.7	22.26
Zm00001d016957_P003	Maize	nucleus	39.26	22.08
Zm00001d006094_P001	Maize	nucleus	40.74	21.91
Zm00001d048082_P001	Maize	nucleus	40.74	21.83
Zm00001d028217_P001	Maize	nucleus	40.74	21.32
Zm00001d017932_P002	Maize	nucleus	37.04	21.19
Zm00001d037737_P001	Maize	nucleus	47.41	20.91
Zm00001d041781_P001	Maize	nucleus	44.44	20.91
Zm00001d051465_P002	Maize	nucleus	45.19	20.82
Zm00001d018667_P003	Maize	nucleus	41.48	20.66
Zm00001d022088_P004	Maize	nucleus	39.26	20.54
Zm00001d042591_P002	Maize	nucleus	40.74	20.52
Zm00001d034047_P007	Maize	nucleus	36.3	20.42
Zm00001d008882_P001	Maize	nucleus	49.63	20.36
Zm00001d017614_P003	Maize	nucleus	40.74	19.86
Zm00001d013259_P002	Maize	nucleus	39.26	19.0
Zm00001d023736_P001	Maize	nucleus	34.81	18.29
Zm00001d034045_P003	Maize	nucleus	39.26	18.21
Zm00001d007949_P001	Maize	nucleus	40.74	18.03
Zm00001d050897_P002	Maize	nucleus	37.78	16.14
KRH11095	Soybean	nucleus	4.44	3.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6NUQ5	ProteinID:AQL01873.1	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000842751C
EnsemblPlantsGene:Zm00001d045227	EnsemblPlants:Zm00001d045227_P001	EnsemblPlants:Zm00001d045227_T001	:	:	:

Description

Agamous-like MADS-box AGL8-like protein

Coordinates

chr9:-:16552677..16554919

Molecular Weight (calculated)

14665.6 Da

IEP (calculated)

10.520

GRAVY (calculated)

-0.484

Length

135 amino acids

Sequence
(BLAST)

001: MTIVTTDLSC GPSSKAKGGQ PAVTVSGGDR QGRGKIEIKR IENTTNRQVT FSKRRNGPLK KAYELSVLCD AEVALVVFSS RGCLYEYANN MPLRVRQQQI
101: LHAARVSCLR CPNSEQVRSH LSRGKTAGSE GQLGS

Best Arabidopsis Sequence Match ( AT2G42830.2 )
(BLAST)

001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK RVKEIELQND NMYLRSKITE RTGLQQQESS
201: VIHQGTVYES GVTSSHQSGQ YNRNYIAVNL LEPNQNSSNQ DQPPLQLV

Arabidopsis Description

SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.