Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016957_P003 | Maize | nucleus | 67.09 | 88.33 |
| Zm00001d003409_P001 | Maize | nucleus | 24.05 | 87.36 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 47.47 | 61.48 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 43.35 | 58.3 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 42.09 | 56.36 |
| AT3G57230.1 | Thale cress | nucleus | 42.41 | 55.83 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 43.04 | 55.51 |
| CDX69036 | Canola | nucleus | 42.09 | 55.42 |
| CDX75412 | Canola | nucleus | 42.09 | 55.42 |
| Zm00001d017932_P002 | Maize | nucleus | 40.51 | 54.24 |
| Bra017638.1-P | Field mustard | nucleus | 41.14 | 54.17 |
| CDY49287 | Canola | nucleus | 41.14 | 54.17 |
| CDX72465 | Canola | nucleus | 40.51 | 53.33 |
| KRH42047 | Soybean | nucleus | 36.39 | 47.72 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 21.2 | 45.27 |
| Bra011509.1-P | Field mustard | nucleus | 41.46 | 45.17 |
| Zm00001d045227_P001 | Maize | nucleus | 16.14 | 37.78 |
| Zm00001d045231_P002 | Maize | nucleus | 25.63 | 36.0 |
| Zm00001d034047_P007 | Maize | nucleus | 25.95 | 34.17 |
| Zm00001d042591_P002 | Maize | nucleus | 27.85 | 32.84 |
| Zm00001d031620_P001 | Maize | nucleus | 26.27 | 32.55 |
| Zm00001d022088_P004 | Maize | nucleus | 26.27 | 32.17 |
| Zm00001d048082_P001 | Maize | nucleus | 25.63 | 32.14 |
| Zm00001d006094_P001 | Maize | nucleus | 25.0 | 31.47 |
| Zm00001d018667_P003 | Maize | nucleus | 26.58 | 31.0 |
| Zm00001d039434_P001 | Maize | nucleus | 25.63 | 30.92 |
| Zm00001d013259_P002 | Maize | nucleus | 27.22 | 30.82 |
| Zm00001d028217_P001 | Maize | nucleus | 25.0 | 30.62 |
| Zm00001d021057_P001 | Maize | nucleus | 23.73 | 30.36 |
| Zm00001d023736_P001 | Maize | nucleus | 24.05 | 29.57 |
| Zm00001d023955_P003 | Maize | nucleus | 24.68 | 29.43 |
| Zm00001d051465_P002 | Maize | nucleus | 26.27 | 28.33 |
| Zm00001d041781_P001 | Maize | nucleus | 25.0 | 27.53 |
| Zm00001d034045_P003 | Maize | nucleus | 25.32 | 27.49 |
| Zm00001d007949_P001 | Maize | nucleus | 25.95 | 26.89 |
| Zm00001d037737_P001 | Maize | nucleus | 22.78 | 23.53 |
| Zm00001d017614_P003 | Maize | nucleus | 20.57 | 23.47 |
| Zm00001d008882_P001 | Maize | nucleus | 23.73 | 22.8 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6Q3S4 | ProteinID:AQK53211.1 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000842B771 |
| EnsemblPlantsGene:Zm00001d050897 | EnsemblPlants:Zm00001d050897_P002 | EnsemblPlants:Zm00001d050897_T002 | : | : | : |
Description
MADS-transcription factor 39Agamous-like MADS-box protein AGL16
Coordinates
chr4:+:128983979..129000129
Molecular Weight (calculated)
35559.1 Da
IEP (calculated)
10.204
GRAVY (calculated)
-0.385
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLIIFSS TGRLYEYSST SMKSVIDRYG KAKEEQQVVT NPNSELKFKG VLKKGLDILR
101: SVRPIVYGGL TDVVLLTSSS ILAKGGSKLE TTTAQLARKL SVWFETPAQV LSKLFIRNLT TQRQKYNAQA CNIQMLLQLL HIHRQLMGED LSGLNVKELQ
201: SLENQLETSL RGVRTKKDHL LIDEIHELNR KASLFHQENT DLYNKINLIH QENAELHKKI YETEGPSGVN REPPTPFNFA VVETRDVPVQ LGLSTLPQQN
301: NIEPSTAPKL GLQLSP
101: SVRPIVYGGL TDVVLLTSSS ILAKGGSKLE TTTAQLARKL SVWFETPAQV LSKLFIRNLT TQRQKYNAQA CNIQMLLQLL HIHRQLMGED LSGLNVKELQ
201: SLENQLETSL RGVRTKKDHL LIDEIHELNR KASLFHQENT DLYNKINLIH QENAELHKKI YETEGPSGVN REPPTPFNFA VVETRDVPVQ LGLSTLPQQN
301: NIEPSTAPKL GLQLSP
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
Arabidopsis Description
AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.