Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042315_P001 | Maize | nucleus | 53.75 | 61.43 |
| Solyc10g017640.1.1 | Tomato | nucleus | 43.75 | 57.38 |
| Zm00001d047355_P001 | Maize | nucleus | 51.25 | 54.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.5 | 46.46 |
| KRH48297 | Soybean | nucleus | 47.5 | 42.7 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 67.5 | 35.06 |
| GSMUA_Achr11P... | Banana | nucleus | 56.25 | 28.3 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 67.5 | 27.84 |
| Zm00001d039913_P002 | Maize | nucleus | 60.0 | 27.59 |
| Os08t0531900-01 | Rice | nucleus | 62.5 | 27.32 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 68.75 | 26.83 |
| TraesCS7B01G158900.1 | Wheat | nucleus | 68.75 | 25.35 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 68.75 | 25.11 |
| KXG25532 | Sorghum | nucleus, plastid | 66.25 | 21.12 |
| KRH40554 | Soybean | nucleus | 50.0 | 18.96 |
| KRH00625 | Soybean | nucleus | 48.75 | 18.66 |
| Bra000393.1-P | Field mustard | nucleus | 46.25 | 17.37 |
| CDY60689 | Canola | nucleus | 46.25 | 17.37 |
| CDY53886 | Canola | nucleus | 46.25 | 17.37 |
| CDY37054 | Canola | nucleus | 46.25 | 17.37 |
| Bra039324.1-P | Field mustard | nucleus | 46.25 | 17.37 |
| AT2G45660.1 | Thale cress | nucleus | 46.25 | 17.29 |
| Zm00001d048474_P001 | Maize | nucleus | 50.0 | 17.24 |
| Zm00001d027425_P001 | Maize | nucleus | 48.75 | 17.11 |
| PGSC0003DMT400000028 | Potato | nucleus | 47.5 | 16.96 |
| CDY69077 | Canola | nucleus | 45.0 | 16.9 |
| CDY27368 | Canola | nucleus | 45.0 | 16.9 |
| CDX74755 | Canola | nucleus | 45.0 | 16.9 |
| Bra004928.1-P | Field mustard | nucleus | 45.0 | 16.9 |
| PGSC0003DMT400026576 | Potato | nucleus | 43.75 | 16.36 |
| KRH65189 | Soybean | nucleus | 46.25 | 15.61 |
| KRH48299 | Soybean | nucleus | 0.0 | 0.0 |
| Zm00001d047356_P002 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6KJX3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | ProteinID:ONM03228.1 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000845397A | EnsemblPlantsGene:Zm00001d031625 | EnsemblPlants:Zm00001d031625_P001 | EnsemblPlants:Zm00001d031625_T001 |
| SEG:seg | : | : | : | : | : |
Description
MADS-transcription factor 77Transcription factor MADS37
Coordinates
chr1:+:196773083..196773325
Molecular Weight (calculated)
9269.3 Da
IEP (calculated)
11.844
GRAVY (calculated)
-0.785
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MDAEAARRKQ VAPPQEKRKR GRLELRRIQD RTSRQVRFSK RRSGLFKKAH ELSVLCDAEV AMVVFSPAGR LYHYASLGTR
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS QMEKIIDRYG KFSNAFYVAE RPQVERYLQE LKMEIDRMVK
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKVQTLGHK YIYNIYTHVN DVIMSSLVDL GA
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKVQTLGHK YIYNIYTHVN DVIMSSLVDL GA
Arabidopsis Description
AGL71AGAMOUS-like 71 [Source:TAIR;Acc:AT5G51870]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.