Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93352 | Sorghum | nucleus | 86.84 | 84.98 |
| Zm00001d048474_P001 | Maize | nucleus | 84.21 | 82.76 |
| Solyc10g017640.1.1 | Tomato | nucleus | 21.05 | 78.69 |
| Zm00001d047355_P001 | Maize | nucleus | 25.88 | 78.67 |
| KRH48297 | Soybean | nucleus | 28.51 | 73.03 |
| Os03t0122600-01 | Rice | nucleus | 71.93 | 71.3 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 61.4 | 63.64 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 61.4 | 63.06 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 60.53 | 62.16 |
| Zm00001d042315_P001 | Maize | nucleus | 18.86 | 61.43 |
| Bra039324.1-P | Field mustard | nucleus | 51.75 | 55.4 |
| CDY37054 | Canola | nucleus | 51.75 | 55.4 |
| KRH00625 | Soybean | nucleus | 50.44 | 55.02 |
| CDY27368 | Canola | nucleus | 50.88 | 54.46 |
| AT2G45660.1 | Thale cress | nucleus | 50.88 | 54.21 |
| CDY69077 | Canola | nucleus | 50.44 | 53.99 |
| CDX74755 | Canola | nucleus | 50.44 | 53.99 |
| Bra004928.1-P | Field mustard | nucleus | 50.44 | 53.99 |
| KRH40554 | Soybean | nucleus | 49.56 | 53.55 |
| Bra000393.1-P | Field mustard | nucleus | 50.0 | 53.52 |
| CDY53886 | Canola | nucleus | 49.56 | 53.05 |
| CDY60689 | Canola | nucleus | 49.12 | 52.58 |
| Zm00001d047356_P002 | Maize | nucleus | 26.32 | 50.42 |
| PGSC0003DMT400000028 | Potato | nucleus | 48.68 | 49.55 |
| PGSC0003DMT400026576 | Potato | nucleus | 46.49 | 49.53 |
| Zm00001d031625_P001 | Maize | nucleus | 17.11 | 48.75 |
| KRH65189 | Soybean | nucleus | 46.93 | 45.15 |
| KRH48299 | Soybean | nucleus | 23.25 | 38.69 |
| Zm00001d039913_P002 | Maize | nucleus | 26.75 | 35.06 |
Protein Annotations
| EntrezGene:100279630 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:B6T709 | ncoils:Coil | EMBL:EU960774 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| ProteinID:ONL93130.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000182BE8F | EnsemblPlantsGene:Zm00001d027425 | EnsemblPlants:Zm00001d027425_P001 | EnsemblPlants:Zm00001d027425_T001 |
| SEG:seg | : | : | : | : | : |
Description
agamous-like6 agamous-like6
Coordinates
chr1:-:4979131..4994850
Molecular Weight (calculated)
25942.4 Da
IEP (calculated)
9.655
GRAVY (calculated)
-0.817
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENPASRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG SAQKTIERYR TYTKDNVSNK TAHQDIEQVK ADAEGLAKKL
101: EALEAYKRKL LGERLEECSF EELHSLEVKL EKSLHCIRGR KTQLLEEQLH KLKEKEMNLR KSNEDLREKC KKQPPPPPPM LMAPPPPPAP AAIDHTGPKD
201: VGMDVETELY IGLPGRDYRS NNKDMTAQ
101: EALEAYKRKL LGERLEECSF EELHSLEVKL EKSLHCIRGR KTQLLEEQLH KLKEKEMNLR KSNEDLREKC KKQPPPPPPM LMAPPPPPAP AAIDHTGPKD
201: VGMDVETELY IGLPGRDYRS NNKDMTAQ
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.