Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39016 | Sorghum | nucleus | 67.23 | 35.4 |
| KRH48299 | Soybean | nucleus | 37.82 | 32.85 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 54.62 | 29.82 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 55.46 | 28.7 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 54.62 | 28.26 |
| Os10t0536100-01 | Rice | nucleus | 53.78 | 27.47 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 51.26 | 26.75 |
| Zm00001d027425_P001 | Maize | nucleus | 50.42 | 26.32 |
| TraesCS1D01G203400.1 | Wheat | nucleus | 50.42 | 25.97 |
| Zm00001d048474_P001 | Maize | nucleus | 47.06 | 24.14 |
| Bra004928.1-P | Field mustard | nucleus | 34.45 | 19.25 |
| Bra039324.1-P | Field mustard | nucleus | 34.45 | 19.25 |
| CDX74755 | Canola | nucleus | 34.45 | 19.25 |
| CDY69077 | Canola | nucleus | 34.45 | 19.25 |
| CDY27368 | Canola | nucleus | 34.45 | 19.25 |
| CDY37054 | Canola | nucleus | 34.45 | 19.25 |
| KRH00625 | Soybean | nucleus | 33.61 | 19.14 |
| KRH40554 | Soybean | nucleus | 32.77 | 18.48 |
| AT2G45660.1 | Thale cress | nucleus | 32.77 | 18.22 |
| Bra000393.1-P | Field mustard | nucleus | 31.93 | 17.84 |
| CDY53886 | Canola | nucleus | 31.09 | 17.37 |
| PGSC0003DMT400000028 | Potato | nucleus | 31.93 | 16.96 |
| PGSC0003DMT400026576 | Potato | nucleus | 30.25 | 16.82 |
| CDY60689 | Canola | nucleus | 29.41 | 16.43 |
| KRH65189 | Soybean | nucleus | 31.09 | 15.61 |
| Zm00001d039913_P002 | Maize | nucleus | 10.92 | 7.47 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 1.68 | 1.3 |
| Solyc10g017640.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| KRH48297 | Soybean | nucleus | 0.0 | 0.0 |
| Zm00001d031625_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d042315_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d047355_P001 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1D6P8V9 | ProteinID:AQL06236.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | PFAM:PF01486 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF349 | InterPro:TF_Kbox | UniParc:UPI0008438647 | EnsemblPlantsGene:Zm00001d047356 |
| EnsemblPlants:Zm00001d047356_P002 | EnsemblPlants:Zm00001d047356_T002 | : | : | : | : |
Description
MADS-transcription factor 76MADS-box transcription factor 56
Coordinates
chr9:+:127436188..127437918
Molecular Weight (calculated)
13748.4 Da
IEP (calculated)
5.818
GRAVY (calculated)
-0.963
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCRMFLGEN LEECSIEELH NLEVKLAKSL HVIRGKKTQL LEQQISKLKE KERTLLQDNK ELRDKQRNLQ SPPEAPPDLN RCVPPWPRSL PAPSNDMDVE
101: TELYIGLPGR ERSSNRDSD
101: TELYIGLPGR ERSSNRDSD
001: MSSQYSAMLN SLSSSSPREE GFMNSLALIC RRRSNATAST QKIMKPAITT HKFTCRKLLG QGIASCSLEE LQEIDSQLQR SLGKVRERKA QLFKEQLEKL
101: KAKEKQLLEE NVKLHQKNVI NPWRGSSTDQ QQEKYKVIDL NLEVETDLFI GLPNRNC
101: KAKEKQLLEE NVKLHQKNVI NPWRGSSTDQ QQEKYKVIDL NLEVETDLFI GLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.