Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G199900.1 | Wheat | nucleus | 96.1 | 97.37 |
| TraesCS1D01G203300.2 | Wheat | nucleus | 86.58 | 86.96 |
| Solyc10g017640.1.1 | Tomato | nucleus | 21.21 | 80.33 |
| Zm00001d047355_P001 | Maize | nucleus | 25.54 | 78.67 |
| KRH48297 | Soybean | nucleus | 27.27 | 70.79 |
| KXG39016 | Sorghum | nucleus | 66.23 | 67.7 |
| Os10t0536100-01 | Rice | nucleus | 67.97 | 67.38 |
| TraesCS7D01G037000.1 | Wheat | cytosol | 17.75 | 67.21 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 42.86 | 64.29 |
| TraesCS4D01G341700.1 | Wheat | nucleus | 53.68 | 55.86 |
| AT2G45660.1 | Thale cress | nucleus | 48.92 | 52.8 |
| KRH00625 | Soybean | nucleus | 47.62 | 52.63 |
| Bra004928.1-P | Field mustard | nucleus | 48.48 | 52.58 |
| CDX74755 | Canola | nucleus | 48.48 | 52.58 |
| CDY69077 | Canola | nucleus | 48.48 | 52.58 |
| Bra000393.1-P | Field mustard | nucleus | 48.05 | 52.11 |
| Bra039324.1-P | Field mustard | nucleus | 48.05 | 52.11 |
| CDY37054 | Canola | nucleus | 48.05 | 52.11 |
| CDY27368 | Canola | nucleus | 48.05 | 52.11 |
| CDY53886 | Canola | nucleus | 47.62 | 51.64 |
| KRH40554 | Soybean | nucleus | 46.75 | 51.18 |
| CDY60689 | Canola | nucleus | 46.75 | 50.7 |
| Zm00001d047356_P002 | Maize | nucleus | 25.97 | 50.42 |
| PGSC0003DMT400000028 | Potato | nucleus | 48.05 | 49.55 |
| PGSC0003DMT400026576 | Potato | nucleus | 45.89 | 49.53 |
| TraesCS6D01G014600.1 | Wheat | nucleus | 48.48 | 43.24 |
| KRH65189 | Soybean | nucleus | 44.16 | 43.04 |
| TraesCS3D01G428000.1 | Wheat | nucleus | 27.27 | 39.62 |
| TraesCS3D01G427900.1 | Wheat | nucleus | 26.84 | 37.13 |
| KRH48299 | Soybean | nucleus | 21.21 | 35.77 |
| TraesCS3D01G427700.1 | Wheat | mitochondrion, nucleus | 25.54 | 35.54 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 26.84 | 29.95 |
| TraesCS7D01G261900.1 | Wheat | nucleus | 26.84 | 28.31 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1D01G203400 | EnsemblPlants:TraesCS1D01G203400.1 | TIGR:cd00265 | : |
Description
No Description!
Coordinates
chr1D:+:288082689..288103412
Molecular Weight (calculated)
25873.2 Da
IEP (calculated)
9.438
GRAVY (calculated)
-0.570
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEVALAVFSP RGRLYEFSSA TSLQKSIDRY KAYTKDNNVN NKTVQPDIQQ VKADTVSLAK
101: KLEALEVSKL KILGENLGGC SAEELNCLEV NIEKSLRTIR GKKTQVLEQQ IANLKEKERM LLKDNEDLRG KQRDLEASLV VPALNCVTPL QPRGQLAPEQ
201: EPVPSDEDVE TELYIGLPGV RCSNRRSGQA K
101: KLEALEVSKL KILGENLGGC SAEELNCLEV NIEKSLRTIR GKKTQVLEQQ IANLKEKERM LLKDNEDLRG KQRDLEASLV VPALNCVTPL QPRGQLAPEQ
201: EPVPSDEDVE TELYIGLPGV RCSNRRSGQA K
001: MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
101: IELLEFHKRK LLGQGIASCS LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS TDQQQEKYKV IDLNLEVETD
201: LFIGLPNRNC
Arabidopsis Description
AGL42MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.