Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G045920.2 | Barley | cytosol | 89.66 | 97.78 |
| TraesCS5D01G148000.1 | Wheat | plastid | 98.75 | 96.48 |
| TraesCS5A01G144000.1 | Wheat | plastid | 97.81 | 96.3 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 67.24 | 81.4 |
| Os11t0124300-01 | Rice | nucleus, plastid | 82.6 | 80.95 |
| Os12t0122000-01 | Rice | plastid | 83.07 | 80.3 |
| TraesCS4B01G124000.1 | Wheat | plastid | 82.6 | 77.61 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 38.4 | 77.53 |
| Zm00001d052380_P001 | Maize | plastid | 79.94 | 76.35 |
| Zm00001d005029_P001 | Maize | plastid | 78.84 | 74.19 |
| OQU82754 | Sorghum | plastid | 82.29 | 73.84 |
| GSMUA_Achr11P... | Banana | plastid | 55.64 | 61.85 |
| CDX78219 | Canola | nucleus, plastid | 55.8 | 59.04 |
| CDX73496 | Canola | nucleus, plastid | 56.9 | 58.36 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 56.58 | 55.28 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 57.21 | 54.32 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 58.62 | 52.9 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 36.99 | 52.56 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 60.66 | 49.49 |
| Solyc10g074680.1.1 | Tomato | cytosol | 59.09 | 45.64 |
| PGSC0003DMT400043358 | Potato | cytosol | 58.93 | 45.52 |
| KRH40615 | Soybean | nucleus, plastid | 56.74 | 43.99 |
| KRH00551 | Soybean | nucleus, plastid | 57.21 | 43.35 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 26.18 | 36.23 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 23.35 | 32.89 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 20.06 | 32.41 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 21.79 | 31.59 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 7.21 | 31.51 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 20.53 | 30.54 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 24.14 | 29.11 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 23.2 | 28.52 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 22.57 | 27.85 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 21.0 | 27.57 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 22.1 | 27.27 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 22.41 | 26.14 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 24.45 | 25.12 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 26.8 | 23.92 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 20.69 | 23.91 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 17.71 | 23.84 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G143100.1 | EnsemblPlantsGene:TraesCS5B01G143100 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 | : |
Description
No Description!
Coordinates
chr5B:-:270011275..270014076
Molecular Weight (calculated)
68307.3 Da
IEP (calculated)
6.435
GRAVY (calculated)
-0.152
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSLLLFS SSSSASRSSY SHATASSSSH CHLLPCPPDF LLHLLDHQDQ EPAAMVRKRP ATDMDLPPPR RHVTGDLSDM TAGPPVLSSA TAQLPALPSQ
101: LLPPFQLQQQ VDHMDVAAAA APAQAGEAAN TTAFVDGIIR DIIGSSGAGV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS LLASDPAPPQ QHQPALLPNA
201: PMPMAALPPP PPDKRRREEE REPNNPPQSP KPPSAEETAA AAAAASAAVK ERKEGQRRKQ RDEEGLHLLT LLLQCAESVN ADNLDEAQTA LLEIAELATP
301: FGTSTQRVAA YFAEAVSARL VSSCLGLYAP LPHASPAASR LVNGRVAAAF QVFNGISPLV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI
401: LASRPGGPPR VRLTGLGASM DALEATGKRL SDFADTLGLP FEFCPVADKA GNLDPEKLGV TRREAVAVHW LHHSLYDVTG SDSNTLCLIK RLAPKVVTMV
501: EQDLRHTGSF LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP SRTGDVKFGC WRDRLARSGF GAASLAGSAA AQAALLLGMF
601: PSDGYTLVEE NGALKLGWKD LTLLTASAWR PMHASSGR
101: LLPPFQLQQQ VDHMDVAAAA APAQAGEAAN TTAFVDGIIR DIIGSSGAGV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS LLASDPAPPQ QHQPALLPNA
201: PMPMAALPPP PPDKRRREEE REPNNPPQSP KPPSAEETAA AAAAASAAVK ERKEGQRRKQ RDEEGLHLLT LLLQCAESVN ADNLDEAQTA LLEIAELATP
301: FGTSTQRVAA YFAEAVSARL VSSCLGLYAP LPHASPAASR LVNGRVAAAF QVFNGISPLV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI
401: LASRPGGPPR VRLTGLGASM DALEATGKRL SDFADTLGLP FEFCPVADKA GNLDPEKLGV TRREAVAVHW LHHSLYDVTG SDSNTLCLIK RLAPKVVTMV
501: EQDLRHTGSF LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP SRTGDVKFGC WRDRLARSGF GAASLAGSAA AQAALLLGMF
601: PSDGYTLVEE NGALKLGWKD LTLLTASAWR PMHASSGR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.