Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G054000.1 | Wheat | cytosol | 95.8 | 95.27 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 94.15 | 94.5 |
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 80.8 | 79.07 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 79.52 | 78.95 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 81.9 | 78.73 |
| Os03t0723000-01 | Rice | nucleus | 81.35 | 76.99 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 43.51 | 67.42 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 67.82 | 67.09 |
| KRH29015 | Soybean | cytosol | 29.8 | 57.19 |
| Bra012102.1-P | Field mustard | cytosol | 16.82 | 54.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.46 | 51.59 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 53.93 | 51.13 |
| KRH24039 | Soybean | cytosol | 44.79 | 50.94 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 49.36 | 48.13 |
| AT3G50650.1 | Thale cress | cytosol | 46.07 | 46.49 |
| AT5G66770.1 | Thale cress | cytosol | 49.54 | 46.4 |
| CDY53846 | Canola | cytosol | 48.26 | 45.28 |
| CDY72338 | Canola | cytosol | 47.9 | 44.79 |
| Solyc02g085340.1.1 | Tomato | cytosol | 49.18 | 44.17 |
| PGSC0003DMT400038574 | Potato | cytosol | 49.18 | 44.03 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 48.81 | 43.56 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 22.67 | 31.39 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 22.85 | 29.14 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 23.95 | 28.92 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 22.3 | 27.73 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 22.67 | 27.62 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 7.13 | 26.71 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 25.59 | 26.46 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 21.94 | 26.03 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 22.49 | 25.31 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 27.24 | 23.99 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 22.67 | 23.89 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 22.49 | 23.79 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 19.74 | 22.78 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 21.39 | 22.63 |
| TraesCS5B01G143100.1 | Wheat | plastid | 26.14 | 22.41 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 21.75 | 21.56 |
| TraesCS4B01G124000.1 | Wheat | plastid | 26.51 | 21.35 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 25.96 | 19.86 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G054000.1 | EnsemblPlantsGene:TraesCS4B01G054000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF65 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr4B:-:42775452..42777095
Molecular Weight (calculated)
58733.3 Da
IEP (calculated)
4.559
GRAVY (calculated)
-0.047
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCADSGN LMAIAQQVIQ QQQQHNQQQQ RHHHHHLVPS PMPMPAAPVP PHAQIPGSLP FGAAGSAAWP QAENFFSDVF GASAADAVFS DLAAGTDFDS
101: DVWMESLIGD APVFQDSDLD RLIFTTPPPP VAPPAEAEDA APQVENAPAS LPTVAAAAQA ACSSPGSPDA SCSAPILQSL LACSRAAAAN PALAAAELAK
201: VRAAATESGD PAERVAFYFS DALARRLPCG GAASLETASD ARLASDEVTL CYKTLNDACP YSKFAHLTAN QAILEATGAA TKIHIVDFGI VQGIQWAALL
301: QALATRPEGK PSRIRISGVP SPYLGPQPAA SLAATSARLR DFAQLLGVDF EFVPLLRPVH ELDQSDFSVD PDEVVAVNFM LQLYHLLGDS DEPVRRVLRL
401: AKSLGPAVVT LGEYEVSLNR AGFVDRFASA LSYYRAVFES LDVAMARDSE DRATLERCMF GERIRRAVGP PEGADRTDRM AGSAEWQALM EWCGFEPVRL
501: SNYAESQAEL LLWDYDSKYK YSLVELPPAF LSLAWEKRPL LTVSAWR
101: DVWMESLIGD APVFQDSDLD RLIFTTPPPP VAPPAEAEDA APQVENAPAS LPTVAAAAQA ACSSPGSPDA SCSAPILQSL LACSRAAAAN PALAAAELAK
201: VRAAATESGD PAERVAFYFS DALARRLPCG GAASLETASD ARLASDEVTL CYKTLNDACP YSKFAHLTAN QAILEATGAA TKIHIVDFGI VQGIQWAALL
301: QALATRPEGK PSRIRISGVP SPYLGPQPAA SLAATSARLR DFAQLLGVDF EFVPLLRPVH ELDQSDFSVD PDEVVAVNFM LQLYHLLGDS DEPVRRVLRL
401: AKSLGPAVVT LGEYEVSLNR AGFVDRFASA LSYYRAVFES LDVAMARDSE DRATLERCMF GERIRRAVGP PEGADRTDRM AGSAEWQALM EWCGFEPVRL
501: SNYAESQAEL LLWDYDSKYK YSLVELPPAF LSLAWEKRPL LTVSAWR
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.