CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	KRG89812	AT2G41090.1	17360592
AT5G66770.1	KRG94975	AT2G41090.1	17360592
AT5G66770.1	KRH18664	AT2G41090.1	17360592
AT5G66770.1	KRG89812	AT5G21274.1	17360592
AT5G66770.1	KRG94975	AT5G21274.1	17360592
AT5G66770.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012102.1-P	Field mustard	cytosol	39.3	66.67
KRH24039	Soybean	cytosol	91.23	54.05
AT3G50650.1	Thale cress	cytosol	67.37	35.42
AT5G66770.1	Thale cress	cytosol	71.58	34.93
CDY72338	Canola	cytosol	69.47	33.85
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	41.75	33.71
CDY53846	Canola	cytosol	68.77	33.62
GSMUA_AchrUn_...	Banana	cytosol	61.05	32.52
PGSC0003DMT400038574	Potato	cytosol	69.12	32.24
Solyc02g085340.1.1	Tomato	cytosol	67.72	31.69
GSMUA_Achr3P30530_001	Banana	cytosol	62.81	31.02
TraesCS4B01G054000.1	Wheat	cytosol	57.19	29.8
GSMUA_Achr4P07320_001	Banana	cytosol	58.6	29.77
Zm00001d033834_P001	Maize	cytosol, plastid	57.54	29.76
TraesCS4A01G260600.1	Wheat	cytosol	56.84	29.72
TraesCS4D01G054000.1	Wheat	cytosol	56.84	29.45
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	57.54	29.34
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	56.14	28.93
Zm00001d013385_P001	Maize	cytosol, plastid	57.54	28.82
VIT_04s0023g01660.t01	Wine grape	cytosol	61.4	28.55
Os03t0723000-01	Rice	nucleus	57.54	28.37
KRG92263	Soybean	cytosol	34.04	24.31
KRH34954	Soybean	cytosol	33.68	23.7
KRH29089	Soybean	mitochondrion	35.44	22.85
KRH24117	Soybean	plastid	33.68	21.57
KRG91825	Soybean	nucleus	34.04	20.86
KRH70202	Soybean	cytosol	34.74	20.8
KRH29971	Soybean	cytosol	31.58	20.36
KRH62871	Soybean	cytosol	31.58	20.32
KRH29080	Soybean	cytosol	32.28	20.22
KRH08555	Soybean	cytosol	33.33	20.17
KRH34544	Soybean	cytosol	33.68	19.67
KRH24106	Soybean	cytosol, nucleus, peroxisome	31.23	19.56
KRH54840	Soybean	cytosol	34.39	19.41
KRH63032	Soybean	cytosol	34.04	19.28
KRH19587	Soybean	cytosol	34.39	18.63
KRH42544	Soybean	cytosol, nucleus, plastid	33.33	18.38
KRH32212	Soybean	cytosol	34.39	18.25
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	29.12	17.85
KRG97933	Soybean	nucleus	36.14	17.64
KRH58636	Soybean	nucleus	32.28	17.59
KRH30942	Soybean	cytosol	36.49	17.48
KRH44884	Soybean	cytosol	26.32	17.32
KRH03910	Soybean	cytosol	30.18	16.73
KRH27822	Soybean	nucleus, plastid	27.72	16.7
KRH57194	Soybean	cytosol	29.82	16.63
KRH13057	Soybean	cytosol	31.23	16.04
KRH06900	Soybean	plastid	35.44	14.72
KRG94590	Soybean	plastid	35.09	14.68
KRH03976	Soybean	mitochondrion, nucleus	33.33	14.2
KRH57249	Soybean	plastid	32.63	14.01
KRH40615	Soybean	nucleus, plastid	37.54	13.0
KRH00551	Soybean	nucleus, plastid	37.54	12.71

Protein Annotations

MapMan:15.5.12	UniProt:A0A0R0HEU3	EMBL:ACUP02006777	EnsemblPlantsGene:GLYMA_11G0920001	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EnsemblPlants:KRH29015	ProteinID:KRH29015
ProteinID:KRH29015.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	InterPro:TF_GRAS
UniParc:UPI0006ED59A9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6973865..6974722

Molecular Weight (calculated)

31537.7 Da

IEP (calculated)

6.687

GRAVY (calculated)

0.047

Length

285 amino acids

Sequence
(BLAST)

001: FDQLTANQAI LEATQTASNI HIVDFGIVQG IQWAALLQAF ATRPSGKPNK IRISGIPALS LGSSPGPSLS ATAHRLSDFA KLLDLNFHFT PILTPIHQLD
101: RNSFCIDDTN EALAVNFMLQ LYNLLDEPPT AVDTALRLAK SLNPKIVTLG EYEASVTRFG FVNRFKTAFK YFSAVFESLE PNLAADSPER FQVESLLLGR
201: RIAAVIGGPG SVRRESMEDK EQWRVLMERA GFESVSLSHY AISQAKILLW NYSYSSLFSL VESTPPGFLS LAWKDVPLLT VSSWR

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.