Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 94.37 | 93.02 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 93.65 | 90.69 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 78.95 | 79.82 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 78.95 | 79.52 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 79.13 | 79.27 |
| Os03t0723000-01 | Rice | nucleus | 80.4 | 76.64 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 59.53 | 59.31 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 37.75 | 58.92 |
| KRH29015 | Soybean | cytosol | 29.76 | 57.54 |
| Bra012102.1-P | Field mustard | cytosol | 17.24 | 56.55 |
| KRH24039 | Soybean | cytosol | 43.92 | 50.31 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 52.63 | 50.26 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.46 | 49.91 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 48.28 | 47.42 |
| AT5G66770.1 | Thale cress | cytosol | 49.91 | 47.09 |
| CDY53846 | Canola | cytosol | 48.28 | 45.63 |
| CDY72338 | Canola | cytosol | 48.09 | 45.3 |
| AT3G50650.1 | Thale cress | cytosol | 44.46 | 45.2 |
| PGSC0003DMT400038574 | Potato | cytosol | 49.91 | 45.01 |
| Solyc02g085340.1.1 | Tomato | cytosol | 49.73 | 44.99 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 45.92 | 41.27 |
| Zm00001d015815_P001 | Maize | cytosol | 22.5 | 29.81 |
| Zm00001d021826_P001 | Maize | cytosol | 23.59 | 28.76 |
| Zm00001d042127_P001 | Maize | plastid | 23.23 | 28.64 |
| Zm00001d044065_P001 | Maize | cytosol | 24.68 | 28.63 |
| Zm00001d046783_P001 | Maize | mitochondrion | 23.23 | 28.07 |
| Zm00001d011881_P001 | Maize | cytosol | 22.87 | 28.06 |
| Zm00001d025133_P001 | Maize | cytosol | 23.59 | 26.32 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 23.23 | 25.7 |
| Zm00001d038518_P001 | Maize | cytosol | 21.23 | 23.54 |
| Zm00001d013465_P001 | Maize | cytosol | 26.68 | 23.52 |
| Zm00001d033680_P001 | Maize | nucleus | 26.86 | 23.49 |
| Zm00001d023248_P001 | Maize | cytosol | 20.87 | 22.73 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 19.96 | 22.59 |
| Zm00001d009646_P001 | Maize | plastid | 19.42 | 22.53 |
| Zm00001d042472_P001 | Maize | cytosol | 21.96 | 22.49 |
| Zm00001d052463_P001 | Maize | cytosol | 21.05 | 22.18 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 18.51 | 22.08 |
| Zm00001d052380_P001 | Maize | plastid | 26.5 | 21.86 |
| Zm00001d005029_P001 | Maize | plastid | 26.86 | 21.83 |
| Zm00001d045507_P001 | Maize | plastid | 22.5 | 20.13 |
| Zm00001d049249_P001 | Maize | plastid | 27.04 | 19.23 |
| Zm00001d023247_P001 | Maize | plastid | 17.42 | 17.14 |
Protein Annotations
| EnsemblPlants:Zm00001d033834_P001 | EnsemblPlants:Zm00001d033834_T001 | EnsemblPlantsGene:Zm00001d033834 | EntrezGene:103643942 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF65 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AIB04513.1 |
| ProteinID:ONM08741.1 | SEG:seg | UniParc:UPI0002218D37 | UniProt:A0A060D4M4 | MapMan:15.5.12 | : |
Description
GRAS-transcription factor 65Scarecrow-like protein 7
Coordinates
chr1:+:275262743..275264398
Molecular Weight (calculated)
59845.2 Da
IEP (calculated)
5.033
GRAVY (calculated)
-0.091
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCADSGN LMAIAQQVIQ QQQQQQQHQR HHHHLPPLPL PLPPRQAPPM PPAPAPASPH GQIPAASLPY GGGAWSQADH FFPDAFVGTS PADAVFPDLS
101: AAADFDSDVW MDSLIGDAPV FADSDLERLI FTTPPPPVDA AAQPESATRA SLPQPAAVAT AAACSSPSSL DASCSAPILQ SLLACSRTAA ADPGLAAVEL
201: VKVRAAASED GDPAERVAFY FGDALARRLA CGGGAQAQPL TAVDARFATD ELTLCYKTLN DACPYSKFAH LTANQAILEA TGTATKIHIV DFGIVQGIQW
301: AALLQALATR PGEKPSRVRI SGLPSPYLGP KPATSLAATS ARLRDFAKLL GVEFEFVPLL RSVHELDRSD FLVEPDETVA VNFMLQLYHL LGDSDEPVRR
401: VLRLVKSLDP SVVTLGEYEV SLNRAGFVDR FSNALLYYKP VFESLDVAMP RDSPERVRVE RCMFGERIRR AIGPEEGAER TDRMAASREW QTLMEWCGFE
501: PVKLSNYAMS QADLLLWNYD SKYKYSLVEL PPAFLSLAWE KRPLLTVSAW R
101: AAADFDSDVW MDSLIGDAPV FADSDLERLI FTTPPPPVDA AAQPESATRA SLPQPAAVAT AAACSSPSSL DASCSAPILQ SLLACSRTAA ADPGLAAVEL
201: VKVRAAASED GDPAERVAFY FGDALARRLA CGGGAQAQPL TAVDARFATD ELTLCYKTLN DACPYSKFAH LTANQAILEA TGTATKIHIV DFGIVQGIQW
301: AALLQALATR PGEKPSRVRI SGLPSPYLGP KPATSLAATS ARLRDFAKLL GVEFEFVPLL RSVHELDRSD FLVEPDETVA VNFMLQLYHL LGDSDEPVRR
401: VLRLVKSLDP SVVTLGEYEV SLNRAGFVDR FSNALLYYKP VFESLDVAMP RDSPERVRVE RCMFGERIRR AIGPEEGAER TDRMAASREW QTLMEWCGFE
501: PVKLSNYAMS QADLLLWNYD SKYKYSLVEL PPAFLSLAWE KRPLLTVSAW R
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.