Factsheet for Zm00001d052464_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011514_P001
Zm00001d029638_P001
Zm00001d030959_P001
Zm00001d043816_P001
Zm00001d043971_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Zm00001d011514_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d029638_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d030959_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043816_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043971_P001	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09233	Sorghum	cytosol	67.76	67.76
Zm00001d023248_P001	Maize	cytosol	38.19	36.76
Zm00001d042127_P001	Maize	plastid	32.85	35.79
Zm00001d052463_P001	Maize	cytosol	37.37	34.8
Zm00001d011881_P001	Maize	cytosol	32.03	34.74
CDY45059	Canola	cytosol	21.56	34.54
CDY68881	Canola	cytosol	17.25	34.43
GSMUA_Achr8P09690_001	Banana	cytosol	31.42	34.3
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	31.01	31.92
Bra018848.1-P	Field mustard	cytosol	28.34	31.36
Zm00001d023247_P001	Maize	plastid	35.73	31.07
Solyc12g099900.1.1	Tomato	nucleus	29.77	30.98
Solyc01g008910.2.1	Tomato	cytosol	30.18	30.88
CDY22795	Canola	cytosol, plastid	28.13	30.86
PGSC0003DMT400011839	Potato	cytosol	29.57	30.77
PGSC0003DMT400058477	Potato	cytosol	29.77	30.72
Bra014251.1-P	Field mustard	cytosol	27.72	30.34
VIT_13s0019g01220.t01	Wine grape	cytosol	29.57	30.13
KRH29080	Soybean	cytosol	28.13	30.11
CDY03601	Canola	cytosol	27.52	29.84
KRH24106	Soybean	cytosol, nucleus, peroxisome	27.72	29.67
AT1G50420.1	Thale cress	cytosol	29.36	29.67
VIT_06s0009g02390.t01	Wine grape	cytosol	28.54	29.32
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	27.52	28.82
KRH27822	Soybean	nucleus, plastid	26.9	27.7
KRH62871	Soybean	cytosol	25.05	27.54
KRH29971	Soybean	cytosol	24.64	27.15
Zm00001d044065_P001	Maize	cytosol	26.08	26.74
Zm00001d015815_P001	Maize	cytosol	21.77	25.48
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	23.82	25.11
Zm00001d021826_P001	Maize	cytosol	21.36	23.01
Zm00001d042472_P001	Maize	cytosol	24.85	22.49
Zm00001d046783_P001	Maize	mitochondrion	20.12	21.49
Zm00001d038518_P001	Maize	cytosol	21.77	21.33
Zm00001d009646_P001	Maize	plastid	20.74	21.26
Zm00001d013385_P001	Maize	cytosol, plastid	23.61	20.21
Zm00001d033834_P001	Maize	cytosol, plastid	22.59	19.96
Zm00001d025133_P001	Maize	cytosol	19.51	19.23
Zm00001d045507_P001	Maize	plastid	23.82	18.83
Zm00001d052380_P001	Maize	plastid	25.05	18.26
Zm00001d013465_P001	Maize	cytosol	23.41	18.24
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	18.48	18.07
Zm00001d033680_P001	Maize	nucleus	23.2	17.94
Zm00001d005029_P001	Maize	plastid	24.44	17.55
Zm00001d049249_P001	Maize	plastid	25.67	16.13
CDY37137	Canola	plastid	27.72	14.15
GSMUA_Achr11P...	Banana	cytosol	29.57	13.07

Protein Annotations

EnsemblPlants:Zm00001d052464_P001	EnsemblPlants:Zm00001d052464_T001	EnsemblPlantsGene:Zm00001d052464	EntrezGene:103654329	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF21	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK57290.1
SEG:seg	UniParc:UPI0002218542	UniProt:K7V297	MapMan:15.5.12	:	:

Description

GRAS-transcription factor 13Scarecrow-like protein 3

Coordinates

chr4:-:190503131..190505583

Molecular Weight (calculated)

51459.3 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.151

Length

487 amino acids

Sequence
(BLAST)

001: MYTPTPPPSS SSSAMHHPVT TPAENDDDVP TCAPALWQER LVQDLCGCAG HVEAGAVERA GRCLARATGL AAAAAGDGPL QRLAVPMADA LARRLVRLML
101: PAVAGALIDP SDSLDPRGVR AARRTFFELC PFPRAAVAVA NRAILEAMEN EKNVHIVDFA GPTAQPWQWL KLLHDFSRRP GGPPHLRLTI VHDDRDLLAA
201: ISARLTEEAE ELDVPFQVHR VVGKIEALDP SDLHGVLRLR SGEARAVACT LQLHRLLAVA DDDDHPAGGG ATLSAGHRSS RTASVAVSRL QRMASTSCPP
301: SDVDDSGSPA TPLGFVSPPP STPPPPQQQR QTPPALASFL AAVARALAPA VVVVTEQEAG HGGVSFRERF GEALGYYAAV YDCLDAAAEA YRRPAAERAE
401: VERAVLGEEI RDVLLRAGAH GAGRVQERGA ELRRDEGGER RAGQVRPQRV RGDGEQGAGR LPALVLELVA TLLGVGVAAG RIRLVGS

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.