Factsheet for Zm00001d009646_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23987	Sorghum	cytosol	63.37	57.33
Os05t0574900-01	Rice	plasma membrane	47.16	44.8
TraesCS5A01G511900.1	Wheat	cytosol	39.79	43.35
TraesCS4B01G342800.1	Wheat	cytosol	40.0	43.18
Zm00001d044065_P001	Maize	cytosol	41.89	41.89
KRG92263	Soybean	cytosol	35.16	41.85
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	41.05	40.46
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	40.42	39.26
TraesCS1D01G421200.1	Wheat	cytosol	40.84	38.19
TraesCS1B01G443800.1	Wheat	cytosol	40.63	37.33
KRH34544	Soybean	cytosol	36.63	35.66
HORVU1Hr1G090800.1	Barley	mitochondrion	40.21	35.63
KRH63032	Soybean	cytosol	37.68	35.59
KRH54840	Soybean	cytosol	37.68	35.45
VIT_11s0016g04630.t01	Wine grape	plastid	38.11	34.02
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	37.89	29.46
Zm00001d042127_P001	Maize	plastid	24.21	25.73
Zm00001d011881_P001	Maize	cytosol	23.37	24.72
Zm00001d013465_P001	Maize	cytosol	32.21	24.48
Zm00001d033680_P001	Maize	nucleus	32.42	24.44
Zm00001d023248_P001	Maize	cytosol	25.26	23.72
Zm00001d021826_P001	Maize	cytosol	22.53	23.67
Zm00001d015815_P001	Maize	cytosol	20.63	23.56
Zm00001d042472_P001	Maize	cytosol	25.47	22.49
Zm00001d038518_P001	Maize	cytosol	23.16	22.13
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	22.74	21.69
Zm00001d025133_P001	Maize	cytosol	22.32	21.46
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	20.63	21.21
Zm00001d046783_P001	Maize	mitochondrion	20.21	21.05
Zm00001d052463_P001	Maize	cytosol	22.95	20.84
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	21.26	20.74
Zm00001d033834_P001	Maize	cytosol, plastid	22.53	19.42
Zm00001d013385_P001	Maize	cytosol, plastid	22.53	18.8
Zm00001d045507_P001	Maize	plastid	24.21	18.67
Zm00001d023247_P001	Maize	plastid	21.47	18.21
Zm00001d049249_P001	Maize	plastid	27.79	17.03
Zm00001d052380_P001	Maize	plastid	23.79	16.92
Zm00001d005029_P001	Maize	plastid	23.58	16.52

Protein Annotations

EnsemblPlants:Zm00001d009646_P001	EnsemblPlants:Zm00001d009646_T001	EnsemblPlantsGene:Zm00001d009646	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF7	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK92340.1	SEG:seg
UniParc:UPI0008438222	UniProt:A0A1D6FKW5	MapMan:15.5.12	:	:	:

Description

scarecrow-like1 scarecrow-like1

Coordinates

chr8:+:74205128..74206555

Molecular Weight (calculated)

52292.7 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.097

Length

475 amino acids

Sequence
(BLAST)

001: MDPFTAMALS GTLSPSFSTT STNDTMYNLN PALYASLVPP IRKPATPTTL EVGRQCKEEE DASIRLVHLL ITCTSAIETG DYSIAQGNLS EARKILGEIP
101: TSTGIGRVGK HFIDALVQRL FPAYPHAAPP SPSPSTSIDL HNNFYDAGPY LKFAYSTANQ AILKAIKGYN HVHIIDFSLM QGLQWPALMD VFSAREGGPP
201: KLRITGIGPN PIGGRDELHE VGIRLAKYAH SVGIDFTFQG VCVDQLDRLC DWMLLKPIKG EAVAINSILQ LHRLLVDPDA NPVVPAPIDI LLKLVIKINP
301: MIFTVVEHEA DHNRPPLLER FTNALFHYAT MFDSLEAMHR CTSGRDITDS LTEVYLRGEI FDIVCGEGSA RTERHELFGH WRERLTYAGL TQVWFDPDEV
401: DTLKDQLIHV TSLSGSGFNI LVCDGSLALA WHNRPLYVAT AWCVTGGNAA SSMVGNICKG TNDSRRKENR NGPME

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.