Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29713 | Sorghum | cytosol | 85.58 | 89.67 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 68.03 | 72.19 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 68.27 | 71.9 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 67.79 | 71.39 |
| Os02t0197300-00 | Rice | cytosol | 67.79 | 63.23 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 67.79 | 63.23 |
| Zm00001d046783_P001 | Maize | mitochondrion | 62.5 | 57.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.38 | 43.98 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 38.22 | 43.09 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 39.42 | 42.82 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 38.22 | 41.95 |
| VIT_19s0015g01930.t01 | Wine grape | cytosol | 41.59 | 41.89 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 41.59 | 40.14 |
| Solyc07g066250.1.1 | Tomato | nucleus | 41.11 | 39.95 |
| CDY50028 | Canola | nucleus, plastid | 36.06 | 35.97 |
| CDY54362 | Canola | plastid | 36.06 | 35.63 |
| AT1G55580.1 | Thale cress | plastid | 36.3 | 33.93 |
| Bra038002.1-P | Field mustard | nucleus, plastid | 36.06 | 33.86 |
| Zm00001d042127_P001 | Maize | plastid | 28.61 | 26.62 |
| Zm00001d021826_P001 | Maize | cytosol | 28.37 | 26.11 |
| Zm00001d011881_P001 | Maize | cytosol | 27.16 | 25.17 |
| Zm00001d044065_P001 | Maize | cytosol | 28.37 | 24.84 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 29.09 | 24.3 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 29.81 | 22.5 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 30.53 | 22.32 |
| Zm00001d025133_P001 | Maize | cytosol | 26.44 | 22.27 |
| Zm00001d038518_P001 | Maize | cytosol | 26.44 | 22.13 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 25.48 | 21.77 |
| Zm00001d009646_P001 | Maize | plastid | 23.56 | 20.63 |
| Zm00001d052463_P001 | Maize | cytosol | 25.48 | 20.27 |
| Zm00001d023248_P001 | Maize | cytosol | 23.8 | 19.57 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 21.63 | 19.48 |
| Zm00001d042472_P001 | Maize | cytosol | 23.8 | 18.4 |
| Zm00001d013465_P001 | Maize | cytosol | 27.4 | 18.24 |
| Zm00001d033680_P001 | Maize | nucleus | 27.4 | 18.1 |
| Zm00001d045507_P001 | Maize | plastid | 25.96 | 17.53 |
| Zm00001d005029_P001 | Maize | plastid | 27.88 | 17.11 |
| Zm00001d052380_P001 | Maize | plastid | 27.4 | 17.07 |
| Zm00001d049249_P001 | Maize | plastid | 31.25 | 16.77 |
| Zm00001d023247_P001 | Maize | plastid | 21.15 | 15.71 |
Protein Annotations
| EnsemblPlants:Zm00001d015815_P001 | EnsemblPlants:Zm00001d015815_T001 | EnsemblPlantsGene:Zm00001d015815 | EntrezGene:103626839 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF49 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AIB05183.1 |
| ProteinID:AQK69580.1 | SEG:seg | UniParc:UPI000221C15D | UniProt:A0A060D6F1 | MapMan:15.5.12 | : |
Description
GRAS-transcription factor 17Scarecrow-like protein 18
Coordinates
chr5:+:123354228..123355478
Molecular Weight (calculated)
43487.2 Da
IEP (calculated)
5.544
GRAVY (calculated)
-0.042
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGAPGHDGD DAAERAQEQA AAAAAAAADD APSSPRGLVV ASAGLLHRGD VDGARRATAE VLSTMDQRGD AADRLAHHFA RALARLVDDK AAAAGGGDVA
101: AAPAGGAPPP APPGPTAYLA YNQIAPFLRF AHLTANQAIL DAAASTSGGA RRLHIVDLDA AHGVQWPPLL QAIANRADPA VGPLEVRITG AGPDRDVLLR
201: TGDRLRAFAS SLNLPFRFHP LHLPYSVQLA ADPNTGLELH SDETLAVNCV LFLHRLGGEG EVATFLKWVK SMNPAVVTIA EKEANSIGSD DCSDDLPRRV
301: TAAMSYYSAV FDALEATVPP GSADRLLVES EVLGREIDAA LTPGRVGEHS WGFDAWASAA RTAGLSPRPL SAFAVSQARL LLRLHYPSEG YVAEEARGAC
401: FLGWQTRPLM AVSSWQ
101: AAPAGGAPPP APPGPTAYLA YNQIAPFLRF AHLTANQAIL DAAASTSGGA RRLHIVDLDA AHGVQWPPLL QAIANRADPA VGPLEVRITG AGPDRDVLLR
201: TGDRLRAFAS SLNLPFRFHP LHLPYSVQLA ADPNTGLELH SDETLAVNCV LFLHRLGGEG EVATFLKWVK SMNPAVVTIA EKEANSIGSD DCSDDLPRRV
301: TAAMSYYSAV FDALEATVPP GSADRLLVES EVLGREIDAA LTPGRVGEHS WGFDAWASAA RTAGLSPRPL SAFAVSQARL LLRLHYPSEG YVAEEARGAC
401: FLGWQTRPLM AVSSWQ
001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK
Arabidopsis Description
SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.