Factsheet for Zm00001d038518_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18409	Sorghum	cytosol	87.93	88.64
TraesCS1B01G314500.1	Wheat	peroxisome	68.41	73.75
HORVU1Hr1G069140.1	Barley	cytosol	68.61	73.02
TraesCS1A01G304000.1	Wheat	peroxisome	71.43	72.3
TraesCS1D01G303500.1	Wheat	peroxisome	70.42	71.72
Os05t0485400-00	Rice	peroxisome	70.22	69.8
PGSC0003DMT400087504	Potato	nucleus	39.64	40.53
VIT_07s0005g03700.t01	Wine grape	cytosol	39.24	40.04
Solyc09g066450.1.1	Tomato	cytosol	39.03	38.8
KRH19587	Soybean	cytosol	37.42	35.36
KRH32212	Soybean	cytosol	36.82	34.08
Zm00001d021826_P001	Maize	cytosol	30.78	33.85
Zm00001d044065_P001	Maize	cytosol	26.56	27.79
Zm00001d042127_P001	Maize	plastid	24.55	27.29
Zm00001d011881_P001	Maize	cytosol	24.35	26.95
Zm00001d015815_P001	Maize	cytosol	22.13	26.44
Zm00001d052380_P001	Maize	plastid	35.01	26.05
Zm00001d046783_P001	Maize	mitochondrion	23.74	25.88
Zm00001d005029_P001	Maize	plastid	34.61	25.37
Zm00001d042472_P001	Maize	cytosol	26.56	24.54
Zm00001d023248_P001	Maize	cytosol	24.14	23.72
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	21.73	23.38
Zm00001d009646_P001	Maize	plastid	22.13	23.16
Zm00001d025133_P001	Maize	cytosol	22.54	22.67
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	22.33	22.29
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	21.33	21.77
Zm00001d033834_P001	Maize	cytosol, plastid	23.54	21.23
Zm00001d013385_P001	Maize	cytosol, plastid	23.74	20.74
Zm00001d052463_P001	Maize	cytosol	21.73	20.65
Zm00001d013465_P001	Maize	cytosol	25.75	20.48
Zm00001d033680_P001	Maize	nucleus	25.96	20.48
Zm00001d045507_P001	Maize	plastid	23.94	19.32
Zm00001d049249_P001	Maize	plastid	29.58	18.97
Zm00001d023247_P001	Maize	plastid	20.52	18.21

Protein Annotations

EnsemblPlants:Zm00001d038518_P001	EnsemblPlants:Zm00001d038518_T001	EnsemblPlantsGene:Zm00001d038518	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF22	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK86796.1	SEG:seg
UniParc:UPI000843C947	UniProt:A0A1D6M6V4	MapMan:15.5.12	:	:	:

Description

GRAS-transcription factor 56Protein SCARECROW

Coordinates

chr6:+:159108179..159109672

Molecular Weight (calculated)

52005.7 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.007

Length

497 amino acids

Sequence
(BLAST)

001: MSAGRGSDMQ DSLSLMQFHD PYLYGGSAGS ASLPLPHPFL PQHHQGFVHG CTSKGVAEFV DPEATAEVGG EQGFAVSKEV SEGGGDGAVE VEERNDAATT
101: ARGEEEAHGV RMIALLMESA VAVSVGNLAD ANGMLLELAQ MASPYASSCG ERLVAYFTKA LAARLMSSWV GICAPLAPPC AAVHAAFRAF YNVSPLARFA
201: YLACNQAILE AFHGKRLVHI VDLDVVPGGA LQWLSLLPAL AARPGGPPVL RVTGFGISRS ALHDTGNQLA GLASKLSMPF EFYAIARRPG DAVVGAAAAD
301: MPSRRPGEAL AVHWLRHALY DAAGDDAATM QLVRWLEPKV LTLVEQERGS PGDGGAGAGA AGHDEHGHFL DRFVSALHHY SAMFDSLGAS RPSDEDASRH
401: LVEQGVLGRE IGNVLAVGGP SRSGRGKFGC WQAELDRLGF LRAGGGGRAQ LVAGACPAGL GYTVADDQDG TVRLGWKGTP LYAVSTWAWC PSPHAQR

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.