Factsheet for Zm00001d003657_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81603	Sorghum	cytosol	52.81	73.46
Zm00001d025133_P001	Maize	cytosol	68.67	69.23
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	58.23	60.42
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	58.23	59.67
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	57.83	59.5
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	57.23	59.5
Os04t0432100-00	Rice	nucleus	59.24	58.53
VIT_18s0076g00200.t01	Wine grape	cytosol	30.52	46.63
KRH34954	Soybean	cytosol	35.94	44.2
GSMUA_Achr6P17870_001	Banana	cytosol	38.55	43.05
GSMUA_Achr10P...	Banana	nucleus	36.95	41.91
KRH08555	Soybean	cytosol	38.96	41.19
KRG91825	Soybean	nucleus	37.75	40.43
PGSC0003DMT400023877	Potato	cytosol	33.33	40.29
KRH70202	Soybean	cytosol	38.15	39.92
Solyc11g017100.1.1	Tomato	cytosol	35.34	36.97
Zm00001d015815_P001	Maize	cytosol	24.3	29.09
Zm00001d021826_P001	Maize	cytosol	25.3	27.88
Zm00001d042127_P001	Maize	plastid	24.1	26.85
Zm00001d011881_P001	Maize	cytosol	23.49	26.06
Zm00001d044065_P001	Maize	cytosol	24.7	25.89
Zm00001d046783_P001	Maize	mitochondrion	22.89	25.0
Zm00001d033834_P001	Maize	cytosol, plastid	25.7	23.23
Zm00001d009646_P001	Maize	plastid	21.69	22.74
Zm00001d013385_P001	Maize	cytosol, plastid	25.9	22.67
Zm00001d038518_P001	Maize	cytosol	22.29	22.33
Zm00001d042472_P001	Maize	cytosol	22.69	21.0
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	18.88	20.35
Zm00001d013465_P001	Maize	cytosol	25.1	20.0
Zm00001d005029_P001	Maize	plastid	27.11	19.91
Zm00001d052380_P001	Maize	plastid	26.71	19.91
Zm00001d023248_P001	Maize	cytosol	20.08	19.76
Zm00001d033680_P001	Maize	nucleus	24.7	19.52
Zm00001d045507_P001	Maize	plastid	24.1	19.48
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	18.07	18.48
Zm00001d052463_P001	Maize	cytosol	18.88	17.97
Zm00001d049249_P001	Maize	plastid	27.91	17.94
Zm00001d023247_P001	Maize	plastid	16.67	14.82

Protein Annotations

EnsemblPlants:Zm00001d003657_P001	EnsemblPlants:Zm00001d003657_T001	EnsemblPlantsGene:Zm00001d003657	EntrezGene:103646445	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF19	PFAM:PF03514	PFscan:PS50985	ProteinID:ONM17422.1
SEG:seg	UniParc:UPI00022168A9	UniProt:A0A1D6EAN3	MapMan:15.5.12	:	:

Description

GRAS-transcription factor 25Protein SCARECROW

Coordinates

chr2:+:52665039..52666535

Molecular Weight (calculated)

53736.4 Da

IEP (calculated)

8.660

GRAVY (calculated)

-0.289

Length

498 amino acids

Sequence
(BLAST)

001: MNLTLSLATN GGATAKKRKL LRDSVVVDDD VTTSCDGGDR RHGRVARLLL QAGRERVTAK LEADDDRLRL LHLLLASVSA AEAGDARAAA AALHEVRRRA
101: SFRGGDPAQR VAAHFARALA ASSLVVRSPP GAEAEASPPT RAERFLAHTM FYQASPIYQF AHFTANQAIV EAFQSGGRRR RRLHVVDLDV SYGFQWPSLI
201: QSLSAAAAAS ASTSTSSASH DGDEPVSLRI TGFGTSHDEL RRTEARLARF ASGFPSLMFE FDGIVDDGPD SVLRDERIKV VDHDATVVVN LVLPGSRSSM
301: TTGTRQKARS ALLARTIHSL NPSLVFLVEK DGGGGGNNNA TSRGTGRSSL LLPAFTASLR YFSAVFDSLH ECLPADSAER LAIERDHLGV EISDAMACLD
401: FNSNGGDDDH MAEPSWRQMM ERSGLFEGVE LSTRTVSQAK LLLKMKSAGC GGGGFRVVEG EGGRAMSLAW RDREQLITAT GWRRRRPSID HHEARVHG

Best Arabidopsis Sequence Match ( AT3G03450.1 )
(BLAST)

001: MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA

Arabidopsis Description

RGL2RGL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VH73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.