Factsheet for Zm00001d045507_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87757	Sorghum	mitochondrion	92.37	89.33
Os06t0127800-01	Rice	plastid	80.36	80.23
HORVU7Hr1G010620.1	Barley	cytosol	70.13	76.73
TraesCS7D01G053600.1	Wheat	plastid	76.79	75.44
TraesCS7A01G059000.1	Wheat	plastid	76.14	74.8
TraesCS4A01G430600.1	Wheat	plastid	75.32	74.72
GSMUA_Achr1P16230_001	Banana	cytosol	34.25	59.27
GSMUA_Achr7P05850_001	Banana	mitochondrion	47.4	44.92
GSMUA_Achr1P18840_001	Banana	cytosol	43.83	43.97
VIT_02s0025g04000.t01	Wine grape	plastid	44.81	42.07
Solyc08g080400.1.1	Tomato	plastid	44.32	40.21
PGSC0003DMT400007879	Potato	plastid	44.16	40.06
AT1G63100.2	Thale cress	plastid	41.88	39.21
Bra026999.1-P	Field mustard	nucleus, plastid	37.99	38.81
CDY49199	Canola	plastid	39.61	38.61
Bra027620.1-P	Field mustard	plastid	39.45	38.45
KRH57249	Soybean	plastid	41.4	38.4
CDY47352	Canola	plastid	39.45	38.15
CDY45974	Canola	plastid	39.94	38.14
CDY70213	Canola	plastid	39.61	37.95
KRH03976	Soybean	mitochondrion, nucleus	41.07	37.82
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	45.94	32.83
Zm00001d042127_P001	Maize	plastid	21.43	29.53
Zm00001d044065_P001	Maize	cytosol	22.24	28.84
Zm00001d021826_P001	Maize	cytosol	21.1	28.76
Zm00001d011881_P001	Maize	cytosol	20.94	28.73
Zm00001d042472_P001	Maize	cytosol	22.89	26.21
Zm00001d015815_P001	Maize	cytosol	17.53	25.96
Zm00001d023248_P001	Maize	cytosol	20.45	24.9
Zm00001d025133_P001	Maize	cytosol	19.97	24.9
Zm00001d046783_P001	Maize	mitochondrion	18.34	24.78
Zm00001d009646_P001	Maize	plastid	18.67	24.21
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	19.48	24.1
Zm00001d038518_P001	Maize	cytosol	19.32	23.94
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	18.83	23.82
Zm00001d013465_P001	Maize	cytosol	23.86	23.52
Zm00001d013385_P001	Maize	cytosol, plastid	21.59	23.37
Zm00001d033680_P001	Maize	nucleus	23.86	23.33
Zm00001d052463_P001	Maize	cytosol	19.81	23.33
Zm00001d005029_P001	Maize	plastid	25.32	23.01
Zm00001d052380_P001	Maize	plastid	24.68	22.75
Zm00001d033834_P001	Maize	cytosol, plastid	20.13	22.5
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	16.72	22.29
Zm00001d049249_P001	Maize	plastid	25.81	20.52
Zm00001d023247_P001	Maize	plastid	16.4	18.04

Protein Annotations

EntrezGene:100283946	MapMan:15.5.12	UniProt:A0A1D6NWE2	ProteinID:AQL02432.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987
GO:GO:1900459	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16
InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI00078AE31F	EnsemblPlantsGene:Zm00001d045507	EnsemblPlants:Zm00001d045507_P001	EnsemblPlants:Zm00001d045507_T001
SEG:seg	:	:	:	:	:

Description

GRAS-transcription factor 42Scarecrow-like protein 28

Coordinates

chr9:+:24956261..24958111

Molecular Weight (calculated)

65475.8 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.240

Length

616 amino acids

Sequence
(BLAST)

001: MLAGCSFSSS RHQMSTAQRF DILPYGFSKR ASNRGDGSGA APRVAAPDAR SGGGGGTCSF RAHPAPPVTQ AVSWGAKPEP GGNGAAWERS RAVKRAHEED
101: AGEEYGGPVV RAKRTRMGGD GDKVWFHRSI AGTVQAAGSG DGHEAEEEKA FLVPSAAAFP HGMSAAAAGP SLAVAKKEEF SKSPSNSPAS SGGTDGGSSA
201: VPWPEQLHAQ NGAAARVEAM ELVVALTACA DSVAACNHDA ANYYLARLGE MASPAGPTPM HRVAAYFAEA LTLRVVRMWP QVFDVSPPRE LTDGAVAADD
301: DATALRVLNA VTPIPRFLHF TLNERVLRAF DGHDRVHVID FDIKQGLQWP GLLQSLATRV APPAHVRITG VGESRQELQE TGARLGRVAA ALGLAFEFHA
401: VVDRLEDVRL WMLHVKRGEC VAVNCVLAAH RLLRDETGAA VADFLGLTRS TGAAILLLGE HEDALNSGRW EARFARALRY YAAAFDAVEA AGLADASPAR
501: AKAEEMFARE IRNAVAFEAA DRFERHETFT GWRQRMQEGG FQNAGIGDRE ALQGRMIARM FAPGNYSVQV QGDGEGLTLR WMDQAMYTVS AWTPVSDGGS
601: TVSASVSTTA SHSQHS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.