Factsheet for PGSC0003DMT400007879

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080400.1.1	Tomato	plastid	98.82	98.82
VIT_02s0025g04000.t01	Wine grape	plastid	72.16	74.7
GSMUA_Achr1P16230_001	Banana	cytosol	33.87	64.61
KRH57249	Soybean	plastid	61.27	62.65
KRH03976	Soybean	mitochondrion, nucleus	60.38	61.29
AT1G63100.2	Thale cress	plastid	54.93	56.69
Bra027620.1-P	Field mustard	plastid	51.4	55.22
CDY49199	Canola	plastid	51.25	55.06
CDY47352	Canola	plastid	51.4	54.79
CDY70213	Canola	plastid	51.84	54.74
CDY45974	Canola	plastid	51.84	54.57
Bra026999.1-P	Field mustard	nucleus, plastid	48.01	54.06
GSMUA_Achr7P05850_001	Banana	mitochondrion	51.55	53.85
GSMUA_Achr1P18840_001	Banana	cytosol	46.83	51.79
Os06t0127800-01	Rice	plastid	42.27	46.52
HORVU7Hr1G010620.1	Barley	cytosol	38.29	46.18
TraesCS7D01G053600.1	Wheat	plastid	41.53	44.98
TraesCS4A01G430600.1	Wheat	plastid	40.8	44.61
TraesCS7A01G059000.1	Wheat	plastid	40.94	44.34
Zm00001d045507_P001	Maize	plastid	40.06	44.16
EER87757	Sorghum	mitochondrion	40.65	43.33
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.6	38.28
PGSC0003DMT400052191	Potato	cytosol	20.77	37.6
PGSC0003DMT400030652	Potato	cytosol	20.32	33.58
PGSC0003DMT400057265	Potato	nucleus, plastid	20.77	32.71
PGSC0003DMT400087504	Potato	nucleus	22.09	30.86
PGSC0003DMT400058477	Potato	cytosol	20.62	29.66
PGSC0003DMT400011839	Potato	cytosol	20.18	29.27
PGSC0003DMT400023877	Potato	cytosol	16.35	26.94
PGSC0003DMT400049448	Potato	nucleus	19.88	26.47
PGSC0003DMT400039455	Potato	cytosol	20.77	26.45
PGSC0003DMT400040589	Potato	nucleus	22.24	25.68
PGSC0003DMT400049445	Potato	cytosol	14.43	23.28
PGSC0003DMT400038574	Potato	cytosol	20.62	22.91
PGSC0003DMT400043358	Potato	cytosol	24.45	20.1

Protein Annotations

EntrezGene:102579355	MapMan:15.5.12	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:1900459	InterPro:IPR005202
UniProt:M0ZTN8	PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400003047	PGSC:PGSC0003DMG400003047	EnsemblPlants:PGSC0003DMT400007879	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI0002958A2D	RefSeq:XP_006358871.1
SEG:seg	:	:	:	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003047]

Coordinates

chr8:-:54102875..54105367

Molecular Weight (calculated)

75426.0 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.391

Length

679 amino acids

Sequence
(BLAST)

001: MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK
101: DEFWEKGRSL KRYAEQGCID DESCMSRAKR KKGNRKSGDC SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA APFSFSCSGE EESVCYVPNE
201: VISPPLPMSN NPWIESVVTE ITSFGDKNVS TSQDLAREAS VSSASLDSHG LVLRPNENPG EHEIGNGSRL PNPNDRGEVV TAHNGHNNHR EDDAAELISL
301: LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII PPRDLDRLDD DSSTALRLLN QVSPIPKFIH FTSNEILLRA
401: FEGKDRVHII DFDIKQGLQW PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCVLQM
501: HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS LEARLVNSLR YYAAVFDSIG FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG
601: KWRKLMEQGG FRCTGITERE LFQSQMLLKM YSCEDYRVTK QGNDDAALTL SWLDQPLCTV SAWTPIDAAG SSSSYYQPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.