Factsheet for PGSC0003DMT400040589

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002985	nucleus
PGSC0003DMT400002991	nucleus
PGSC0003DMT400007592	nucleus
PGSC0003DMT400009831
PGSC0003DMT400022650	nucleus
PGSC0003DMT400022651	nucleus
PGSC0003DMT400026783
PGSC0003DMT400056562
PGSC0003DMT400062617
PGSC0003DMT400073501
PGSC0003DMT400075155	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66350.1	PGSC0003DMT400073501	AT3G05120.1	16709201
AT1G66350.1	PGSC0003DMT400073501	AT3G05120.1	19500306
AT1G66350.1	PGSC0003DMT400009831	AT3G63010.1	16709201
AT1G66350.1	PGSC0003DMT400056562	AT3G63010.1	16709201
AT1G66350.1	PGSC0003DMT400009831	AT3G63010.1	19500306
AT1G66350.1	PGSC0003DMT400056562	AT3G63010.1	19500306
AT1G66350.1	PGSC0003DMT400026783	AT4G19700.1	23482857
AT1G66350.1	PGSC0003DMT400062617	AT4G19700.1	23482857
AT1G66350.1	PGSC0003DMT400073501	AT5G27320.1	16709201
AT1G66350.1	PGSC0003DMT400073501	AT5G27320.1	19500306
AT1G66350.1	PGSC0003DMT400026783	AT5G45100.1	23482857
AT1G66350.1	PGSC0003DMT400062617	AT5G45100.1	23482857
AT3G03450.1	PGSC0003DMT400073501	AT3G05120.1	16709201
AT3G03450.1	PGSC0003DMT400073501	AT3G05120.1	19500306
AT3G03450.1	PGSC0003DMT400009831	AT3G63010.1	16709201
AT3G03450.1	PGSC0003DMT400056562	AT3G63010.1	16709201
AT3G03450.1	PGSC0003DMT400009831	AT3G63010.1	19500306
AT3G03450.1	PGSC0003DMT400056562	AT3G63010.1	19500306
AT3G03450.1	PGSC0003DMT400026783	AT4G19700.1	23482857
AT3G03450.1	PGSC0003DMT400062617	AT4G19700.1	23482857
AT3G03450.1	PGSC0003DMT400073501	AT5G27320.1	16709201
AT3G03450.1	PGSC0003DMT400073501	AT5G27320.1	19500306
AT3G03450.1	PGSC0003DMT400026783	AT5G45100.1	23482857
AT3G03450.1	PGSC0003DMT400062617	AT5G45100.1	23482857
AT5G17490.1	PGSC0003DMT400007592	AT1G19180.1	22892320
AT5G17490.1	PGSC0003DMT400075155	AT1G19180.1	22892320
AT5G17490.1	PGSC0003DMT400007592	AT1G19180.1	22892320
AT5G17490.1	PGSC0003DMT400075155	AT1G19180.1	22892320
AT5G17490.1	PGSC0003DMT400002985	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400002991	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400022650	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400022651	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400002985	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400002991	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400022650	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400022651	AT1G30135.1	22892320
AT5G17490.1	PGSC0003DMT400026783	AT4G19700.1	23482857
AT5G17490.1	PGSC0003DMT400062617	AT4G19700.1	23482857
AT5G17490.1	PGSC0003DMT400026783	AT5G45100.1	23482857
AT5G17490.1	PGSC0003DMT400062617	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011260.1.1	Tomato	nucleus	95.75	95.75
CDY50706	Canola	cytosol, extracellular, plastid	8.67	83.61
CDY43123	Canola	cytosol, extracellular, plastid	8.67	83.61
VIT_14s0006g00640.t01	Wine grape	cytosol	65.99	68.19
Bra039762.1-P	Field mustard	cytosol	54.25	65.37
AT1G66350.1	Thale cress	cytosol	56.8	65.36
KRG97933	Soybean	nucleus	64.46	64.9
KRH30942	Soybean	cytosol	65.14	64.37
CDY70426	Canola	cytosol	55.1	63.91
CDY55037	Canola	cytosol	55.1	63.91
AT3G03450.1	Thale cress	nucleus	57.14	61.43
AT5G17490.1	Thale cress	cytosol	53.91	60.61
CDY38434	Canola	cytosol	52.38	60.39
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	51.36	59.8
Bra013973.1-P	Field mustard	cytosol	53.06	59.43
CDY16915	Canola	cytosol, nucleus, plastid	53.06	59.43
CDY43122	Canola	nucleus	35.03	49.4
CDY50707	Canola	cytosol, nucleus, plastid	34.69	49.04
PGSC0003DMT400049448	Potato	nucleus	42.35	48.82
PGSC0003DMT400049445	Potato	cytosol	34.18	47.74
PGSC0003DMT400052191	Potato	cytosol	27.55	43.2
PGSC0003DMT400011839	Potato	cytosol	25.17	31.62
PGSC0003DMT400030652	Potato	cytosol	21.94	31.39
PGSC0003DMT400057265	Potato	nucleus, plastid	22.62	30.86
PGSC0003DMT400058477	Potato	cytosol	24.15	30.08
PGSC0003DMT400023877	Potato	cytosol	19.73	28.16
PGSC0003DMT400087504	Potato	nucleus	22.96	27.78
PGSC0003DMT400039455	Potato	cytosol	23.47	25.89
PGSC0003DMT400007879	Potato	plastid	25.68	22.24
PGSC0003DMT400038574	Potato	cytosol	22.79	21.93
PGSC0003DMT400043358	Potato	cytosol	27.38	19.49

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	ProteinID:AEI25530	ProteinID:AEI25530.1
InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:IPR038088	EMBL:JF834157
UniProt:M1BA42	PFAM:PF03514	PFAM:PF12041	EnsemblPlantsGene:PGSC0003DMG400015692	PGSC:PGSC0003DMG400015692	EnsemblPlants:PGSC0003DMT400040589
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N
InterPro:TF_GRAS	UniParc:UPI000294D143	SEG:seg	:	:	:

Description

DELLA protein GAI [Source:PGSC_GENE;Acc:PGSC0003DMG400015692]

Coordinates

chr11:+:1665431..1667838

Molecular Weight (calculated)

64433.0 Da

IEP (calculated)

4.771

GRAVY (calculated)

-0.274

Length

588 amino acids

Sequence
(BLAST)

001: MKRDRDRERE KKSFNGGVSN GGFSGKGKIW EEDEEETPDA GMDELLAVLG YKVKSSDMAD VAQKLEQLEM AMGTTMEDGI THLSTDTVHK NPSDMAGWVQ
101: SMLSSISTNF DMCNQENELV LSGCGSSSSI IDFSRNEQNH RTTTISDDDL RAIPGGAVFN SDSNKRQRSS SSFSTSMLTD SSAARPVVLV DSQETGVRLV
201: HTLMACAEAV QQENLTLADQ LVRHIGILAV SQSGAMRKVA TYFAEALARR IYKIYPQDSI ESSYTDVLQM HFYETCPYLK FAHFTANQAI LEAFTGCNKV
301: HVIDFSLKQG MQWPALMQAL ALRPGGPPAF RLTGIGPPQP DNTDALQQVG WKLAQLAETI GVEFEFRGFV ANSLADLDAA ILDIRPSETE AVAINSVFEL
401: HRLLSRPGAI EKVLNSIKQI NPKIVTLVEQ EANHNAGVFI DRFNEALHYY STMFDSLESS GSSSSASPTG ILPQPPVNNQ DLVMSEVYLG RQICNVVACE
501: GSDRVERHET LNQWRVRMNS SGFDPVHLGS NAFKQASMLL ALFAGGDGYR VEENDGCLML GWHTRPLIAT SAWKLSPDSG TGAGEVEM

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.