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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000652
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400002963
PGSC0003DMT400002985
PGSC0003DMT400002991
PGSC0003DMT400007592
PGSC0003DMT400018046
PGSC0003DMT400022650
PGSC0003DMT400022651
PGSC0003DMT400036790
PGSC0003DMT400045204
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19180.1 PGSC0003DMT400000652 AT1G01260.1 21798944
AT1G19180.1 PGSC0003DMT400018046 AT1G01260.1 21798944
AT1G19180.1 PGSC0003DMT400007592 AT1G19180.1 19309455
AT1G19180.1 PGSC0003DMT400075155 AT1G19180.1 19309455
AT1G19180.1 PGSC0003DMT400007592 AT1G19180.1 21798944
AT1G19180.1 PGSC0003DMT400075155 AT1G19180.1 21798944
AT1G19180.1 PGSC0003DMT400002985 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400002991 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400022650 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400022651 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400002963 AT1G32640.1 18547396
AT1G19180.1 PGSC0003DMT400045204 AT1G32640.1 18547396
AT1G19180.1 PGSC0003DMT400002963 AT1G32640.1 19309455
AT1G19180.1 PGSC0003DMT400045204 AT1G32640.1 19309455
AT1G19180.1 PGSC0003DMT400036790 AT1G48500.1 19309455
AT1G19180.1 PGSC0003DMT400074101 AT1G48500.1 19309455
AT1G19180.1 PGSC0003DMT400036790 AT3G17860.1 19309455
AT1G19180.1 PGSC0003DMT400074101 AT3G17860.1 19309455
AT1G19180.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT1G74950.1 PGSC0003DMT400002963 AT1G32640.1 19309455
AT1G74950.1 PGSC0003DMT400045204 AT1G32640.1 19309455
AT1G74950.1 PGSC0003DMT400036790 AT3G17860.1 19309455
AT1G74950.1 PGSC0003DMT400074101 AT3G17860.1 19309455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g009220.1.1 Tomato nucleus 85.83 86.51
PGSC0003DMT400075155 Potato nucleus 42.13 49.77
AT1G19180.1 Thale cress cytosol 37.4 37.55
CDY41023 Canola plastid 35.04 35.04
CDY26697 Canola plastid 34.25 34.39
VIT_11s0016g00710.t01 Wine grape cytosol, plastid 36.22 34.33
CDY46022 Canola nucleus 32.28 34.17
Bra008172.1-P Field mustard nucleus 31.89 33.75
CDY37269 Canola nucleus 31.89 33.75
Bra025713.1-P Field mustard plastid 33.46 33.46
GSMUA_Achr5P05170_001 Banana cytosol, mitochondrion, nucleus 31.5 33.2
GSMUA_Achr3P05920_001 Banana nucleus 32.68 33.07
AT1G74950.1 Thale cress cytosol 32.28 32.93
GSMUA_Achr6P31050_001 Banana cytosol 27.56 32.86
GSMUA_Achr9P14370_001 Banana cytosol 34.25 32.83
GSMUA_Achr5P22110_001 Banana mitochondrion 31.89 32.79
PGSC0003DMT400011155 Potato nucleus 25.59 32.5
TraesCS2B01G195600.1 Wheat plastid 29.53 32.47
Bra016520.1-P Field mustard plastid 33.07 32.43
HORVU2Hr1G031310.9 Barley cytosol, mitochondrion, plastid 30.32 32.22
CDX96675 Canola plastid 33.07 31.94
Zm00001d020614_P001 Maize cytosol, plastid 27.17 31.65
TraesCS2D01G176800.1 Wheat plastid 28.74 31.6
EER97533 Sorghum plastid 29.13 31.49
GSMUA_Achr10P... Banana cytosol 20.08 31.48
CDX83781 Canola plastid 32.68 31.44
CDX73127 Canola cytosol 30.32 31.43
Zm00001d022139_P001 Maize plastid 28.74 31.33
GSMUA_Achr2P21770_001 Banana mitochondrion 27.17 31.22
Bra015880.1-P Field mustard cytosol 29.92 31.02
EER98969 Sorghum cytosol 26.77 30.77
Bra031065.1-P Field mustard plastid 33.07 30.77
GSMUA_AchrUn_... Banana nucleus 29.92 30.77
Os07t0615200-01 Rice mitochondrion 29.53 30.74
Os03t0402800-01 Rice plastid 27.56 30.7
Bra003778.1-P Field mustard cytosol 26.77 30.63
GSMUA_Achr3P02140_001 Banana mitochondrion 25.2 30.62
CDY45408 Canola cytosol 29.53 30.61
GSMUA_Achr11P... Banana cytosol 27.56 30.17
GSMUA_Achr7P19850_001 Banana cytosol 28.74 30.17
GSMUA_Achr3P10270_001 Banana cytosol 26.77 30.09
CDX85865 Canola cytosol 25.98 29.46
GSMUA_Achr8P16780_001 Banana cytosol 28.74 28.85
EER92157 Sorghum plastid 25.59 28.51
Zm00001d005813_P002 Maize cytosol, plastid 25.2 28.19
CDX68156 Canola cytosol 20.08 28.18
PGSC0003DMT400064125 Potato cytosol 10.24 27.96
Zm00001d029448_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 24.8 27.63
TraesCS2A01G169300.1 Wheat plastid 24.8 27.27
PGSC0003DMT400058918 Potato nucleus 33.07 27.18
Os09t0439200-01 Rice plastid 24.8 27.16
CDX73289 Canola cytosol 20.08 27.13
Zm00001d006860_P001 Maize plastid 28.35 27.07
TraesCS5D01G219300.2 Wheat nucleus 23.23 25.65
TraesCS5B01G211000.1 Wheat nucleus 22.83 25.22
GSMUA_Achr1P21870_001 Banana mitochondrion 31.5 22.66
HORVU5Hr1G062290.6 Barley mitochondrion, plastid 24.41 21.02
TraesCS5A01G212800.1 Wheat plastid 23.62 20.27
CDX81917 Canola plastid 34.65 17.32
CDY21679 Canola plastid 33.46 15.6
Protein Annotations
EnsemblPlants:PGSC0003DMT400007592EnsemblPlantsGene:PGSC0003DMG400002930EntrezGene:102580049InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_dom
PANTHER:PTHR33077PANTHER:PTHR33077:SF13PFAM:PF06200PFAM:PF09425PFscan:PS51320PGSC:PGSC0003DMG400002930
RefSeq:XP_006345256.1SEG:segSMART:SM00979UniParc:UPI000294D2B7UniProt:M0ZT91MapMan:11.7.2.1.2
MapMan:15.5.45:::::
Description
Jasmonate ZIM-domain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002930]
Coordinates
chr12:-:3177662..3179918
Molecular Weight (calculated)
28433.5 Da
IEP (calculated)
9.803
GRAVY (calculated)
-0.794
Length
254 amino acids
Sequence
(BLAST)
001: MGSSENVDSG KVTGQKSQFS QTCNLLSQFL KKKGSVGDLN NLGIYKTTFE PTGSQQTATT TTTTMNLLPM IEKSSDSSSS SSSVETNPQK PMNLFPQEFD
101: FSKEQSTKKT ESWKFDQPEK AQMTIFYGGQ VIVFDDFPAD KANEIMKLAN KQNPTNNFTY TMMKNQKTSD QSGANFGNKL IQELPKCQVS MPQPSVADLP
201: IARRNSLTRF LEKRKDRVTS IAPYQISSNK KSKNEENKAW LGLGAQFVKT EQYF
Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.