Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26697 | Canola | plastid | 70.36 | 70.36 |
| Bra025713.1-P | Field mustard | plastid | 69.96 | 69.69 |
| CDY41023 | Canola | plastid | 68.38 | 68.11 |
| AT1G74950.1 | Thale cress | cytosol | 51.78 | 52.61 |
| Solyc07g042170.2.1 | Tomato | cytosol | 37.55 | 43.98 |
| PGSC0003DMT400075155 | Potato | nucleus | 36.76 | 43.26 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 40.71 | 38.43 |
| PGSC0003DMT400007592 | Potato | nucleus | 37.55 | 37.4 |
| Solyc12g009220.1.1 | Tomato | nucleus | 35.97 | 36.11 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 27.67 | 32.86 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 28.46 | 32.58 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 30.43 | 31.17 |
| TraesCS2D01G176800.1 | Wheat | plastid | 28.06 | 30.74 |
| TraesCS2B01G195600.1 | Wheat | plastid | 28.06 | 30.74 |
| EER97533 | Sorghum | plastid | 28.06 | 30.21 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 28.46 | 30.13 |
| Zm00001d022139_P001 | Maize | plastid | 27.27 | 29.61 |
| EER98969 | Sorghum | cytosol | 25.69 | 29.41 |
| EER92157 | Sorghum | plastid | 26.48 | 29.39 |
| Os03t0402800-01 | Rice | plastid | 26.48 | 29.39 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 30.43 | 29.06 |
| Os07t0615200-01 | Rice | mitochondrion | 27.67 | 28.69 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 28.46 | 28.69 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 23.32 | 28.23 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 25.3 | 28.19 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 26.88 | 28.1 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 27.67 | 27.67 |
| Os09t0439200-01 | Rice | plastid | 25.3 | 27.59 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 26.09 | 27.39 |
| TraesCS2A01G169300.1 | Wheat | plastid | 24.9 | 27.27 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 24.51 | 27.19 |
| GSMUA_Achr11P... | Banana | cytosol | 24.9 | 27.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.48 | 27.13 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 23.32 | 27.06 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 24.51 | 26.96 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 23.72 | 26.55 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 24.11 | 26.52 |
| Zm00001d006860_P001 | Maize | plastid | 27.67 | 26.32 |
| GSMUA_Achr10P... | Banana | cytosol | 16.6 | 25.93 |
| AT5G20900.1 | Thale cress | cytosol | 18.58 | 25.13 |
| AT1G72450.1 | Thale cress | nucleus | 24.51 | 23.05 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 31.23 | 22.38 |
| TraesCS5A01G212800.1 | Wheat | plastid | 24.9 | 21.28 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 24.51 | 21.02 |
| AT1G17380.1 | Thale cress | nucleus | 22.13 | 20.44 |
| AT3G43440.1 | Thale cress | cytosol | 15.81 | 16.81 |
Protein Annotations
| MapMan:11.7.2.1.2 | MapMan:15.5.45 | PDB:3OGK | PDB:3OGL | PDB:3OGM | PDB:4YZ6 |
| EntrezGene:838501 | UniProt:A0A178W7G1 | ProteinID:AAF82229.1 | ProteinID:AEE29814.1 | EMBL:AF332421 | ProteinID:ANM60136.1 |
| ArrayExpress:AT1G19180 | EnsemblPlantsGene:AT1G19180 | RefSeq:AT1G19180 | TAIR:AT1G19180 | RefSeq:AT1G19180-TAIR-G | EnsemblPlants:AT1G19180.1 |
| TAIR:AT1G19180.1 | EMBL:AY039894 | EMBL:AY058863 | EMBL:AY065146 | EMBL:AY081633 | EMBL:AY081738 |
| EMBL:AY087830 | Unigene:At.22658 | InterPro:CCT_CS | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003714 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009753 |
| GO:GO:0009791 | GO:GO:0009867 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:0042742 |
| GO:GO:1900067 | GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | Symbol:JAZ1 | RefSeq:NP_001319041.1 |
| RefSeq:NP_564075.1 | ProteinID:OAP14288.1 | PFAM:PF06200 | PFAM:PF09425 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51320 |
| PANTHER:PTHR33077 | UniProt:Q9LMA8 | SMART:SM00979 | Symbol:TIFY10A | InterPro:Tify_dom | UniParc:UPI000009F939 |
| SEG:seg | : | : | : | : | : |
Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
Coordinates
chr1:+:6621777..6623620
Molecular Weight (calculated)
27609.7 Da
IEP (calculated)
9.923
GRAVY (calculated)
-0.526
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.