Factsheet for AT1G72450.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016056.1-P	Field mustard	nucleus	50.56	49.63
CDX96409	Canola	nucleus	50.56	49.63
CDY71173	Canola	nucleus	50.19	49.63
CDX72916	Canola	nucleus	48.7	48.34
CDY03638	Canola	nucleus	47.58	46.89
AT1G17380.1	Thale cress	nucleus	44.24	43.43
Bra008033.1-P	Field mustard	nucleus	39.03	38.46
KRH06217	Soybean	nucleus, plastid	22.3	26.09
KRH47640	Soybean	nucleus	22.3	25.86
AT1G74950.1	Thale cress	cytosol	23.42	25.3
AT1G19180.1	Thale cress	cytosol	23.05	24.51
PGSC0003DMT400011155	Potato	nucleus	17.84	24.0
Solyc12g049400.1.1	Tomato	cytosol	17.47	23.5
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	24.54	23.08
AT5G20900.1	Thale cress	cytosol	14.5	20.86
PGSC0003DMT400058918	Potato	nucleus	23.05	20.06
Solyc03g122190.2.1	Tomato	nucleus	23.05	20.06
AT3G43440.1	Thale cress	cytosol	14.5	16.39

Protein Annotations

MapMan:15.5.45	EntrezGene:843577	UniProt:A0A178W2J3	ProteinID:AAG52575.1	ProteinID:AEE35326.1	EMBL:AF370147
ArrayExpress:AT1G72450	EnsemblPlantsGene:AT1G72450	RefSeq:AT1G72450	TAIR:AT1G72450	RefSeq:AT1G72450-TAIR-G	EnsemblPlants:AT1G72450.1
TAIR:AT1G72450.1	EMBL:AY059089	EMBL:AY088035	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009753	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399
Symbol:JAZ6	RefSeq:NP_565043.1	ProteinID:OAP11921.1	PFAM:PF06200	PFAM:PF09425	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	UniProt:Q9C9E3	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI00000A99B1	:	:	:	:	:

Description

TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]

Coordinates

chr1:-:27273968..27276562

Molecular Weight (calculated)

29851.4 Da

IEP (calculated)

9.872

GRAVY (calculated)

-0.777

Length

269 amino acids

Sequence
(BLAST)

001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.