Factsheet for AT1G17380.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71875	Canola	cytosol	39.78	48.44
Bra025977.1-P	Field mustard	nucleus	45.26	48.44
CDY26248	Canola	mitochondrion, nucleus	45.26	46.79
CDX96772	Canola	nucleus	44.53	45.69
AT1G72450.1	Thale cress	nucleus	43.43	44.24
Bra016604.1-P	Field mustard	nucleus	43.43	44.07
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	45.62	43.1
Bra030986.1-P	Field mustard	nucleus	45.26	41.47
CDX81823	Canola	plastid	47.81	39.46
KRH47640	Soybean	nucleus	21.17	25.0
KRH06217	Soybean	nucleus, plastid	20.44	24.35
PGSC0003DMT400011155	Potato	nucleus	16.79	23.0
AT1G74950.1	Thale cress	cytosol	20.44	22.49
AT1G19180.1	Thale cress	cytosol	20.44	22.13
Solyc12g049400.1.1	Tomato	cytosol	16.06	22.0
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	21.17	20.28
AT5G20900.1	Thale cress	cytosol	13.14	19.25
Solyc03g122190.2.1	Tomato	nucleus	20.8	18.45
PGSC0003DMT400058918	Potato	nucleus	20.44	18.12
AT3G43440.1	Thale cress	cytosol	13.5	15.55

Protein Annotations

MapMan:15.5.45	EntrezGene:838310	ProteinID:AAF79491.1	ProteinID:AAF97303.1	ProteinID:AEE29581.1	ArrayExpress:AT1G17380
EnsemblPlantsGene:AT1G17380	RefSeq:AT1G17380	TAIR:AT1G17380	RefSeq:AT1G17380-TAIR-G	EnsemblPlants:AT1G17380.1	TAIR:AT1G17380.1
EMBL:AY087653	EMBL:BT000430	EMBL:BT002543	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009753	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399
Symbol:JAZ5	RefSeq:NP_564019.1	PFAM:PF06200	PFAM:PF09425	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	UniProt:Q9LDU5	SMART:SM00979
InterPro:Tify_dom	UniParc:UPI00000AC19C	SEG:seg	:	:	:

Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]

Coordinates

chr1:-:5955155..5957511

Molecular Weight (calculated)

30344.6 Da

IEP (calculated)

9.260

GRAVY (calculated)

-0.959

Length

274 amino acids

Sequence
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.