Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01320.t01 | |
| VIT_17s0000g02230.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 31.82 | 33.96 |
| PGSC0003DMT400011155 | Potato | nucleus | 23.43 | 33.5 |
| Solyc12g049400.1.1 | Tomato | cytosol | 21.33 | 30.5 |
| KRH06217 | Soybean | nucleus, plastid | 24.48 | 30.43 |
| KRH47640 | Soybean | nucleus | 23.08 | 28.45 |
| Solyc03g122190.2.1 | Tomato | nucleus | 30.07 | 27.83 |
| PGSC0003DMT400058918 | Potato | nucleus | 30.07 | 27.83 |
| AT1G72450.1 | Thale cress | nucleus | 23.08 | 24.54 |
| CDX96772 | Canola | nucleus | 21.33 | 22.85 |
| CDY71173 | Canola | nucleus | 21.33 | 22.43 |
| CDY26248 | Canola | mitochondrion, nucleus | 20.63 | 22.26 |
| Bra016604.1-P | Field mustard | nucleus | 20.98 | 22.22 |
| Bra030986.1-P | Field mustard | nucleus | 23.08 | 22.07 |
| Bra008033.1-P | Field mustard | nucleus | 20.98 | 21.98 |
| CDX96409 | Canola | nucleus | 20.63 | 21.53 |
| Bra016056.1-P | Field mustard | nucleus | 20.63 | 21.53 |
| Bra025977.1-P | Field mustard | nucleus | 19.23 | 21.48 |
| CDY71875 | Canola | cytosol | 16.78 | 21.33 |
| CDY03638 | Canola | nucleus | 20.28 | 21.25 |
| AT1G17380.1 | Thale cress | nucleus | 20.28 | 21.17 |
| VIT_12s0035g00900.t01 | Wine grape | nucleus | 15.04 | 20.77 |
| CDX72916 | Canola | nucleus | 19.58 | 20.66 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 20.28 | 20.0 |
| CDX81823 | Canola | plastid | 22.03 | 18.98 |
Protein Annotations
| EntrezGene:100260039 | wikigene:100260039 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | EMBL:AM478495 | ProteinID:CAN83805 |
| ProteinID:CAN83805.1 | ProteinID:CCB59270 | ProteinID:CCB59270.1 | InterPro:CCT_CS | UniProt:F6HXU5 | EMBL:FN596494 |
| GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:1903507 |
| GO:GO:2000022 | InterPro:IPR010399 | EntrezGene:LOC100260039 | wikigene:LOC100260039 | PFAM:PF06200 | PFAM:PF09425 |
| PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF13 | SMART:SM00979 | InterPro:Tify_dom | UniParc:UPI00015C8371 |
| ArrayExpress:VIT_09s0002g00890 | EnsemblPlantsGene:VIT_09s0002g00890 | EnsemblPlants:VIT_09s0002g00890.t01 | unigene:Vvi.11781 | RefSeq:XP_002272363 | RefSeq:XP_002272363.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:647306..649289
Molecular Weight (calculated)
30657.7 Da
IEP (calculated)
9.829
GRAVY (calculated)
-0.707
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSPEFSDF AGRKSGKLPD RSNFSQTCNL LSQFLKEKGR FGDLSLGMAG KSETKGRPES FKSSTMSFDL LNKDKSSEAS GQNVGGSSNL KSSDFYPQFA
101: GFGSLASIDE AINMADFRKS ATTESETSQM TIFYAGQVLV FNDFPAEKAR EVMLLAAKGT PQNTSGFLST SGPEKINTGS STAPSPSIPA SPATTPNPQA
201: LSSGTFSIPA SPAATPNPQA PLGSELPIAR RNSLHRFLEK RKDRVNSKAP YQVNNPSRPS PKPEEDTNPK LNKDEGQSSK QLDLRL
101: GFGSLASIDE AINMADFRKS ATTESETSQM TIFYAGQVLV FNDFPAEKAR EVMLLAAKGT PQNTSGFLST SGPEKINTGS STAPSPSIPA SPATTPNPQA
201: LSSGTFSIPA SPAATPNPQA PLGSELPIAR RNSLHRFLEK RKDRVNSKAP YQVNNPSRPS PKPEEDTNPK LNKDEGQSSK QLDLRL
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.