Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g103600.2.1 | Tomato | nucleus | 17.39 | 27.91 |
| PGSC0003DMT400064125 | Potato | cytosol | 11.59 | 25.81 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 23.19 | 17.91 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 20.77 | 15.04 |
Protein Annotations
| EntrezGene:100244072 | wikigene:100244072 | MapMan:15.5.45 | ProteinID:CBI29713 | ProteinID:CBI29713.3 | InterPro:CCT_CS |
| UniProt:D7TGU1 | EMBL:FN595990 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | EntrezGene:LOC100244072 | wikigene:LOC100244072 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | SMART:SM00979 |
| InterPro:Tify_dom | UniParc:UPI0001BE380F | ArrayExpress:VIT_12s0035g00900 | EnsemblPlantsGene:VIT_12s0035g00900 | EnsemblPlants:VIT_12s0035g00900.t01 | RefSeq:XP_002263256 |
| RefSeq:XP_002263256.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:20514897..20518670
Molecular Weight (calculated)
23335.7 Da
IEP (calculated)
9.962
GRAVY (calculated)
-0.700
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRKYLISKT QSDGGKTNVD ESETIKRSPL RPLMAPKFGG GSPRLSSLLE QELLPGLRCD NTMSDSSDDK FPGAQLTIFY AGTINVYDHI TMDKVQTILH
101: FARESSSPTN SEAMIPKKDP TIAPSHPSGL PSFCRLQADF PIARKSSLQR FLEKRRDRIT SRSPYASSST KRKENEQKID NYPKEKHCFS PSAFPSQLGY
201: FFPSIKY
101: FARESSSPTN SEAMIPKKDP TIAPSHPSGL PSFCRLQADF PIARKSSLQR FLEKRRDRIT SRSPYASSST KRKENEQKID NYPKEKHCFS PSAFPSQLGY
201: FFPSIKY
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.