CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39044
KRH39540
KRH45440
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	KRH39540	AT1G32640.1	19309455
AT1G17380.1	KRH45440	AT1G32640.1	19309455
AT1G17380.1	KRH74418	AT1G32640.1	19309455
AT1G17380.1	KRH75613	AT1G32640.1	19309455
AT1G17380.1	KRH39044	AT3G17860.1	19309455
AT1G72450.1	KRH39540	AT1G32640.1	19309455
AT1G72450.1	KRH45440	AT1G32640.1	19309455
AT1G72450.1	KRH74418	AT1G32640.1	19309455
AT1G72450.1	KRH75613	AT1G32640.1	19309455
AT1G72450.1	KRH39044	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47640	Soybean	nucleus	58.7	58.19
KRH60862	Soybean	nucleus	26.09	29.85
PGSC0003DMT400011155	Potato	nucleus	24.78	28.5
Solyc12g049400.1.1	Tomato	cytosol	23.91	27.5
KRH12569	Soybean	nucleus	30.0	26.74
KRH19346	Soybean	cytosol	27.83	26.45
KRH02587	Soybean	plastid	27.83	26.45
KRH37526	Soybean	nucleus, plastid	28.26	25.19
KRH51545	Soybean	cytosol	17.39	25.0
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	30.43	24.48
Bra008033.1-P	Field mustard	nucleus	26.96	22.71
Solyc03g122190.2.1	Tomato	nucleus	30.0	22.33
PGSC0003DMT400058918	Potato	nucleus	30.0	22.33
AT1G72450.1	Thale cress	nucleus	26.09	22.3
CDY71173	Canola	nucleus	24.78	20.96
KRH12644	Soybean	nucleus	18.26	20.9
KRH77291	Soybean	mitochondrion	17.39	20.51
AT1G17380.1	Thale cress	nucleus	24.35	20.44
KRH37606	Soybean	cytosol, nucleus, plastid	18.26	20.39
CDY03638	Canola	nucleus	23.91	20.15
CDX96772	Canola	nucleus	23.04	19.85
CDY26248	Canola	mitochondrion, nucleus	22.61	19.62
Bra025977.1-P	Field mustard	nucleus	21.74	19.53
CDX72916	Canola	nucleus	22.61	19.19
Bra016056.1-P	Field mustard	nucleus	22.61	18.98
CDX96409	Canola	nucleus	22.61	18.98
Bra016604.1-P	Field mustard	nucleus	22.17	18.89
KRH19420	Soybean	nucleus	16.52	18.36
CDY71875	Canola	cytosol	17.39	17.78
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	22.17	17.59
Bra030986.1-P	Field mustard	nucleus	22.61	17.39
CDX81823	Canola	plastid	23.04	15.96
KRH02523	Soybean	cytosol	12.61	14.72
KRH28201	Soybean	mitochondrion	12.17	13.79

Protein Annotations

EntrezGene:100815478	MapMan:11.7.2.1.2	MapMan:15.5.45	EMBL:ACUP02009818	EMBL:BT099347	UniProt:C6TNM1
InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_16G010000	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EnsemblPlants:KRH06217	ProteinID:KRH06217
ProteinID:KRH06217.1	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF13
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI0001B1706A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:893311..896396

Molecular Weight (calculated)

24902.4 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.638

Length

230 amino acids

Sequence
(BLAST)

001: MSSFPNTVAE GRRSSKAPEK STFSQTCSLL SQFLKEKRAS ADSTFRIGGK MEPIASTKGL LGSLQNSDGA LKLSASAMEF LPQLVENPCI KKSRSQGPET
101: PQLTIFYAGK MLVFDAFSPE KATEVMEMAT KLASDNSGTE ESPPSAPVAT EKLAVSKVPQ TNTFSETPKA GNQGVGSDMR YPRRASLLKF LEKRKERVNA
201: RGPYQINNHK PEGSSSGGEP EDSQQFDLNL

Best Arabidopsis Sequence Match ( AT1G72450.1 )
(BLAST)

001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL

Arabidopsis Description

TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.