CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12569	Soybean	nucleus	85.66	85.66
KRH60862	Soybean	nucleus	33.72	43.28
KRH51545	Soybean	cytosol	25.97	41.88
KRH19346	Soybean	cytosol	38.76	41.32
KRH02587	Soybean	plastid	38.37	40.91
KRH77291	Soybean	mitochondrion	22.48	29.74
KRH06217	Soybean	nucleus, plastid	25.19	28.26
KRH12644	Soybean	nucleus	20.93	26.87
KRH47640	Soybean	nucleus	24.03	26.72
KRH37606	Soybean	cytosol, nucleus, plastid	20.93	26.21
KRH19420	Soybean	nucleus	17.05	21.26
KRH28201	Soybean	mitochondrion	14.34	18.23
KRH02523	Soybean	cytosol	13.57	17.77

Protein Annotations

MapMan:11.7.2.1.2	MapMan:15.5.45	EMBL:ACUP02005458	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_09G071600	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1L1S4	InterPro:IPR010399	EnsemblPlants:KRH37526	ProteinID:KRH37526	ProteinID:KRH37526.1	ProteinID:KRH37527.1
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF13	SMART:SM00979
InterPro:Tify_dom	UniParc:UPI0001BA62E9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:7366219..7368950

Molecular Weight (calculated)

27826.6 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.430

Length

258 amino acids

Sequence
(BLAST)

001: MSSSSEYSQF SGQKPARSPE KSSFSQTCSL LSQYIKEKGS FGDLTLGMTS CGSPETSCQS ATTMNLFPTK ENNVTPKDLT AMDLFSPQAS SYRPSEEIPT
101: LINSSAIKSV SKSAKTAQMT IFYGGQVVVF DDFPADKASE IMSYATKGIP QSQNNSVFTY TPSQPSFPAN LVRTSADSSA PIIPSVNITN SIHEHPQASS
201: RPVVCDLPIA RKASLHRFLE KRKDRIASKA PYQLANGSSN QPAESMPWLG LSASSPRI

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.