CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39540
KRH45440
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43440.1	KRH39540	AT1G32640.1	19309455
AT3G43440.1	KRH45440	AT1G32640.1	19309455
AT3G43440.1	KRH74418	AT1G32640.1	19309455
AT3G43440.1	KRH75613	AT1G32640.1	19309455
AT5G20900.1	KRH39540	AT1G32640.1	19309455
AT5G20900.1	KRH45440	AT1G32640.1	19309455
AT5G20900.1	KRH74418	AT1G32640.1	19309455
AT5G20900.1	KRH75613	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12644	Soybean	nucleus	87.86	90.05
Zm00001d044708_P001	Maize	cytosol, extracellular, plastid	27.18	37.33
Bra002338.1-P	Field mustard	cytosol	33.98	34.83
CDX92427	Canola	cytosol	33.98	34.83
CDY16574	Canola	cytoskeleton, cytosol, nucleus	33.5	34.67
AT5G20900.1	Thale cress	cytosol	30.1	33.16
Zm00001d033972_P002	Maize	cytosol, extracellular, plastid	27.18	32.37
Os04t0653000-01	Rice	cytosol, nucleus, plastid	33.5	31.94
GSMUA_Achr8P23800_001	Banana	cytosol	28.64	31.89
Zm00001d002029_P003	Maize	nucleus	33.01	31.48
CDY09086	Canola	cytosol	33.5	31.22
HORVU2Hr1G112360.1	Barley	cytosol, mitochondrion, nucleus	30.1	31.16
KRH19420	Soybean	nucleus	31.07	30.92
GSMUA_Achr10P...	Banana	cytosol	26.21	30.51
TraesCS2B01G534800.1	Wheat	extracellular	27.67	30.32
KRH02523	Soybean	cytosol	28.64	29.95
TraesCS2A01G506500.1	Wheat	cytosol	28.64	29.35
OQU82468	Sorghum	nucleus	31.07	29.22
Bra020135.1-P	Field mustard	cytosol	31.07	28.96
GSMUA_Achr7P15650_001	Banana	plastid	20.87	27.74
TraesCS2D01G507200.1	Wheat	nucleus	27.67	27.54
GSMUA_Achr4P09660_001	Banana	cytosol	28.16	26.48
Zm00001d026477_P002	Maize	nucleus	29.13	26.09
GSMUA_Achr8P24590_001	Banana	nucleus	27.18	24.56
KRH77291	Soybean	mitochondrion	22.82	24.1
GSMUA_Achr5P22010_001	Banana	cytosol	18.93	23.78
KRH51545	Soybean	cytosol	18.45	23.75
Zm00001d021924_P001	Maize	plastid	15.53	23.36
Zm00001d046270_P001	Maize	plastid	15.53	23.36
KRH60862	Soybean	nucleus	21.84	22.39
KRH37526	Soybean	nucleus, plastid	26.21	20.93
KRH12569	Soybean	nucleus	25.24	20.16
AT3G43440.1	Thale cress	cytosol	22.82	19.75
Zm00001d013855_P002	Maize	plastid	20.87	18.78
KRH02587	Soybean	plastid	21.84	18.59
KRH06217	Soybean	nucleus, plastid	20.39	18.26
KRH19346	Soybean	cytosol	20.87	17.77
KRH28201	Soybean	mitochondrion	15.53	15.76
KRH47640	Soybean	nucleus	17.48	15.52

Protein Annotations

EntrezGene:100306045	MapMan:15.5.45	EMBL:ACUP02005476	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_09G077500	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1L1X4	InterPro:IPR010399	EnsemblPlants:KRH37606	ProteinID:KRH37606	ProteinID:KRH37606.1	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI00023CA599	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:8551766..8555778

Molecular Weight (calculated)

22116.0 Da

IEP (calculated)

7.453

GRAVY (calculated)

-0.353

Length

206 amino acids

Sequence
(BLAST)

001: MAAGVTVKSE VLESSPPEGV CSNTEENHLV QTNLSDGSPN KYVSNKSVPA SGLNAVIPSA NQLTIFYNGS VCVYDGIPAE KVHEIMLIAA AAAKSTEMKK
101: IVTQTTLISP VPSRPSSPHG ITNNIASSQK SSICRLQAEF PIARRHSLQR FLEKRRDRLG SKAPYPSSST TKVADNIENN FCADNAPELV SLNRSEEEFQ
201: PTVSAS

Best Arabidopsis Sequence Match ( AT5G20900.1 )
(BLAST)

001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA

Arabidopsis Description

TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.