Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 48.26 | 74.0 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 51.3 | 68.21 |
| Zm00001d046270_P001 | Maize | plastid | 33.04 | 55.47 |
| Zm00001d021924_P001 | Maize | plastid | 33.04 | 55.47 |
| Zm00001d002029_P003 | Maize | nucleus | 43.04 | 45.83 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 37.39 | 45.74 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 40.43 | 44.93 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 38.26 | 43.78 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 37.83 | 43.72 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 33.04 | 33.33 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 31.3 | 32.88 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 25.65 | 29.65 |
| AT5G20900.1 | Thale cress | cytosol | 23.91 | 29.41 |
| KRH12644 | Soybean | nucleus | 25.65 | 29.35 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 26.09 | 29.13 |
| CDY09086 | Canola | cytosol | 27.83 | 28.96 |
| Bra020135.1-P | Field mustard | cytosol | 26.96 | 28.05 |
| CDX92427 | Canola | cytosol | 23.48 | 26.87 |
| Bra002338.1-P | Field mustard | cytosol | 23.04 | 26.37 |
| Zm00001d013855_P002 | Maize | plastid | 23.04 | 23.14 |
| KRH19420 | Soybean | nucleus | 19.57 | 21.74 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 20.43 | 21.56 |
| AT3G43440.1 | Thale cress | cytosol | 21.74 | 21.01 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 20.43 | 20.61 |
| Zm00001d022139_P001 | Maize | plastid | 20.43 | 20.17 |
| KRH02523 | Soybean | cytosol | 16.96 | 19.8 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 17.39 | 17.62 |
| Zm00001d006860_P001 | Maize | plastid | 20.0 | 17.29 |
Protein Annotations
| EMBL:BT068219 | EMBL:KJ727954 | EnsemblPlants:Zm00001d026477_P002 | EnsemblPlants:Zm00001d026477_T002 | EnsemblPlantsGene:Zm00001d026477 | EntrezGene:100383759 |
| InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | ncoils:Coil | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:AQK46714.1 | ProteinID:AQK46719.1 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000195CF7A | UniProt:C0PIV0 | MapMan:15.5.45 | : | : |
Description
ZIM-transcription factor 34Putative tify domain/CCT motif transcription factor family protein isoform 1%3B Putative tify domain/CCT motif transcription factor family protein isoform 2%3B ZIM motif family protein
Coordinates
chr10:+:146705762..146709600
Molecular Weight (calculated)
24359.8 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.488
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLEERNIK KGEREMEEAR KEEERKEEAG DRNTQEPQQG QGLSLSLANG SDSGRSGMLP MSNPSANPTQ LTIFYGGSVC VYDSVPPEKA QAIMLIAAAA
101: AAAAATKGSA ATAFNPPMVH TDTVAPAAVF SPVLTRSPSL QSTSVAAGQA QVVADPSSIS KLQADLPIAR RHSLQRFLEK RRDRVVSKAP YSPAKSFDGM
201: ESAGMEMTAD GKQGARPSIL KGWGAAKSEV
101: AAAAATKGSA ATAFNPPMVH TDTVAPAAVF SPVLTRSPSL QSTSVAAGQA QVVADPSSIS KLQADLPIAR RHSLQRFLEK RRDRVVSKAP YSPAKSFDGM
201: ESAGMEMTAD GKQGARPSIL KGWGAAKSEV
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.