Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P09660_001 | Banana | cytosol | 45.18 | 47.03 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 28.51 | 43.33 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 31.58 | 41.62 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 33.33 | 38.19 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 30.7 | 37.23 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 31.58 | 35.82 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 33.77 | 35.65 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 24.12 | 35.48 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 32.02 | 35.27 |
| Zm00001d002029_P003 | Maize | nucleus | 33.33 | 35.19 |
| OQU82468 | Sorghum | nucleus | 33.33 | 34.7 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 28.07 | 34.59 |
| Zm00001d026477_P002 | Maize | nucleus | 33.33 | 33.04 |
| GSMUA_Achr10P... | Banana | cytosol | 24.56 | 31.64 |
| Zm00001d021924_P001 | Maize | plastid | 18.86 | 31.39 |
| Zm00001d046270_P001 | Maize | plastid | 18.86 | 31.39 |
| Bra002338.1-P | Field mustard | cytosol | 25.44 | 28.86 |
| CDX92427 | Canola | cytosol | 25.0 | 28.36 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 24.12 | 27.64 |
| AT5G20900.1 | Thale cress | cytosol | 22.37 | 27.27 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 24.56 | 27.18 |
| KRH12644 | Soybean | nucleus | 23.68 | 26.87 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 19.3 | 26.83 |
| Bra020135.1-P | Field mustard | cytosol | 24.56 | 25.34 |
| CDY09086 | Canola | cytosol | 24.56 | 25.34 |
| Zm00001d013855_P002 | Maize | plastid | 21.93 | 21.83 |
| GSMUA_Achr10P... | Banana | cytosol | 15.35 | 21.6 |
| KRH19420 | Soybean | nucleus | 18.86 | 20.77 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 21.93 | 19.92 |
| AT3G43440.1 | Thale cress | cytosol | 20.18 | 19.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.61 | 19.03 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 17.11 | 18.66 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 21.49 | 18.49 |
| KRH02523 | Soybean | cytosol | 15.79 | 18.27 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 20.18 | 18.18 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 18.86 | 17.77 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 18.42 | 17.43 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 18.86 | 17.41 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 16.67 | 16.81 |
| GSMUA_Achr11P... | Banana | cytosol | 17.11 | 16.81 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 16.23 | 16.74 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 15.35 | 16.43 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 21.49 | 13.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P24590_001 | EnsemblPlants:GSMUA_Achr8T24590_001 | EnsemblPlantsGene:GSMUA_Achr8G24590_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | UniParc:UPI000295C18F | UniProt:M0TTB2 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 3B [Source:GMGC_GENE;Acc:GSMUA_Achr8G24590_001]
Coordinates
chr8:-:28734426..28739705
Molecular Weight (calculated)
23182.4 Da
IEP (calculated)
10.217
GRAVY (calculated)
-0.127
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHFEAQSKP VSGDRSENDT EKAAADASAA HLAPKGSSVA TEVGIRNSPM PTPKPSSTAG PQLIMFYGGT INVYDSVPPE KAQAIMLIAA AMAVATRVST
101: NNTAATAVAA RTSAIRTAAA AAAAHSPVVV GPAAAAATTA VAAPAAPALT RTLSFLSSSA VTDGSPKQPQ LAPNPGSSLC KLQAELPIAR RHSLQRFLEK
201: RRDRVVSKAP YATDKSSDGI KAASEGQL
101: NNTAATAVAA RTSAIRTAAA AAAAHSPVVV GPAAAAATTA VAAPAAPALT RTLSFLSSSA VTDGSPKQPQ LAPNPGSSLC KLQAELPIAR RHSLQRFLEK
201: RRDRVVSKAP YATDKSSDGI KAASEGQL
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.