Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046270_P001 | Maize | plastid | 52.0 | 56.93 |
| Zm00001d021924_P001 | Maize | plastid | 52.0 | 56.93 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 63.33 | 54.91 |
| Zm00001d026477_P002 | Maize | nucleus | 74.0 | 48.26 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 54.0 | 43.09 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 54.0 | 40.3 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 53.33 | 40.2 |
| Zm00001d002029_P003 | Maize | nucleus | 57.33 | 39.81 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 53.33 | 38.65 |
| AT5G20900.1 | Thale cress | cytosol | 36.67 | 29.41 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 42.67 | 29.22 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 43.33 | 28.51 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 36.67 | 27.64 |
| KRH12644 | Soybean | nucleus | 36.67 | 27.36 |
| CDX92427 | Canola | cytosol | 36.67 | 27.36 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 37.33 | 27.18 |
| Bra002338.1-P | Field mustard | cytosol | 36.0 | 26.87 |
| CDY09086 | Canola | cytosol | 36.0 | 24.43 |
| Bra020135.1-P | Field mustard | cytosol | 36.0 | 24.43 |
| KRH19420 | Soybean | nucleus | 32.67 | 23.67 |
| KRH02523 | Soybean | cytosol | 29.33 | 22.34 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 31.33 | 21.56 |
| Zm00001d013855_P002 | Maize | plastid | 32.0 | 20.96 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 28.67 | 18.86 |
| AT3G43440.1 | Thale cress | cytosol | 29.33 | 18.49 |
| Zm00001d022139_P001 | Maize | plastid | 28.0 | 18.03 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 26.67 | 17.62 |
| Zm00001d006860_P001 | Maize | plastid | 26.0 | 14.66 |
Protein Annotations
| EnsemblPlants:Zm00001d044708_P001 | EnsemblPlants:Zm00001d044708_T001 | EnsemblPlantsGene:Zm00001d044708 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:ONM42321.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0008425E4D | UniProt:A0A1D6NQW6 | MapMan:15.5.45 | : |
Description
Protein TIFY 3B
Coordinates
chr3:-:235521147..235522705
Molecular Weight (calculated)
15590.7 Da
IEP (calculated)
10.106
GRAVY (calculated)
-0.092
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPMSNPSAN PTQLTIFYGG SVCVYDSVPP EKAQAIMLIA AAAAAAAATK GSAATAFNPP MSTSVAAGQA QVVADPSSIS KLQADLPIAR RHSLHRFLEK
101: RRDRVVSKAP YSPAKSFDGM ESAGMEMTVD GKQGARPSIL KGWGAAKSEV
101: RRDRVVSKAP YSPAKSFDGM ESAGMEMTVD GKQGARPSIL KGWGAAKSEV
001: MAEVNGDFPV PSFADGTGSV SAGLDLLVER SIHEARSTEP DASTQLTIIF GGSCRVFNGV PAQKVQEIIR IAFAGKQTKN VTGINPALNR ALSFSTVADL
101: PIARRRSLQR FLEKRRDRST KPDGSMILPS QLTIIFGGSF SVFDGIPAEK VQEILHIAAA AKATETINLT SINPALKRAI SFSNASTVAC VSTADVPIAR
201: RRSLQRFFEK RRHRFVHTKP YSATTSEADK NETSPIVT
101: PIARRRSLQR FLEKRRDRST KPDGSMILPS QLTIIFGGSF SVFDGIPAEK VQEILHIAAA AKATETINLT SINPALKRAI SFSNASTVAC VSTADVPIAR
201: RRSLQRFFEK RRHRFVHTKP YSATTSEADK NETSPIVT
Arabidopsis Description
TIFY3AProtein TIFY 3A [Source:UniProtKB/Swiss-Prot;Acc:Q9M246]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.