Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09086 | Canola | cytosol | 65.24 | 55.2 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 57.75 | 54.27 |
| CDX92427 | Canola | cytosol | 56.68 | 52.74 |
| Bra002338.1-P | Field mustard | cytosol | 56.15 | 52.24 |
| Bra020135.1-P | Field mustard | cytosol | 59.36 | 50.23 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 29.41 | 36.67 |
| KRH12644 | Soybean | nucleus | 33.16 | 30.85 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 30.48 | 30.81 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 33.16 | 30.1 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 27.81 | 30.06 |
| GSMUA_Achr10P... | Banana | cytosol | 27.81 | 29.38 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 33.69 | 29.17 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 28.34 | 28.19 |
| OQU82468 | Sorghum | nucleus | 32.62 | 27.85 |
| Zm00001d002029_P003 | Maize | nucleus | 32.09 | 27.78 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 29.41 | 27.64 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 29.95 | 27.05 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 28.88 | 26.87 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 21.93 | 26.45 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 29.41 | 25.11 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 21.93 | 25.0 |
| AT3G43440.1 | Thale cress | cytosol | 31.02 | 24.37 |
| Zm00001d026477_P002 | Maize | nucleus | 29.41 | 23.91 |
| Zm00001d021924_P001 | Maize | plastid | 17.11 | 23.36 |
| Zm00001d046270_P001 | Maize | plastid | 17.11 | 23.36 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 27.27 | 22.37 |
| KRH02523 | Soybean | cytosol | 21.93 | 20.81 |
| AT1G74950.1 | Thale cress | cytosol | 25.13 | 18.88 |
| KRH19420 | Soybean | nucleus | 20.86 | 18.84 |
| AT1G19180.1 | Thale cress | cytosol | 25.13 | 18.58 |
| Zm00001d013855_P002 | Maize | plastid | 21.93 | 17.9 |
| AT1G72450.1 | Thale cress | nucleus | 20.86 | 14.5 |
| AT1G17380.1 | Thale cress | nucleus | 19.25 | 13.14 |
Protein Annotations
| MapMan:15.5.45 | EntrezGene:832214 | ProteinID:AED92902.1 | EMBL:AF296834 | EMBL:AF360184 | ArrayExpress:AT5G20900 |
| EnsemblPlantsGene:AT5G20900 | RefSeq:AT5G20900 | TAIR:AT5G20900 | RefSeq:AT5G20900-TAIR-G | EnsemblPlants:AT5G20900.1 | TAIR:AT5G20900.1 |
| EMBL:AY051013 | InterPro:CCT_CS | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | Symbol:JAZ12 | RefSeq:NP_197590.1 | PFAM:PF06200 |
| PFAM:PF09425 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51320 | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF5 | UniProt:Q9C5K8 | SMART:SM00979 | InterPro:Tify_dom | UniParc:UPI00000A9024 | SEG:seg |
Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
Coordinates
chr5:+:7090704..7092539
Molecular Weight (calculated)
19934.5 Da
IEP (calculated)
8.217
GRAVY (calculated)
-0.415
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.