Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19420 | Soybean | nucleus | 60.91 | 57.97 |
| KRH12644 | Soybean | nucleus | 31.47 | 30.85 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 22.34 | 29.33 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 29.95 | 28.64 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 20.81 | 26.45 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 24.37 | 25.95 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 25.38 | 25.13 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 20.3 | 24.39 |
| GSMUA_Achr10P... | Banana | cytosol | 21.83 | 24.29 |
| Bra002338.1-P | Field mustard | cytosol | 24.37 | 23.88 |
| CDX92427 | Canola | cytosol | 24.37 | 23.88 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 19.29 | 21.97 |
| AT5G20900.1 | Thale cress | cytosol | 20.81 | 21.93 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 20.81 | 20.4 |
| Bra020135.1-P | Field mustard | cytosol | 22.84 | 20.36 |
| CDY09086 | Canola | cytosol | 22.84 | 20.36 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 19.29 | 20.21 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 20.3 | 20.1 |
| KRH77291 | Soybean | mitochondrion | 19.8 | 20.0 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 21.83 | 19.91 |
| KRH51545 | Soybean | cytosol | 15.74 | 19.38 |
| Zm00001d046270_P001 | Maize | plastid | 13.2 | 18.98 |
| Zm00001d021924_P001 | Maize | plastid | 13.2 | 18.98 |
| KRH60862 | Soybean | nucleus | 19.29 | 18.91 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 19.8 | 18.84 |
| AT3G43440.1 | Thale cress | cytosol | 21.83 | 18.07 |
| Zm00001d002029_P003 | Maize | nucleus | 19.8 | 18.06 |
| OQU82468 | Sorghum | nucleus | 19.29 | 17.35 |
| Zm00001d026477_P002 | Maize | nucleus | 19.8 | 16.96 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 18.78 | 16.89 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 18.27 | 15.79 |
| Zm00001d013855_P002 | Maize | plastid | 18.27 | 15.72 |
| KRH02587 | Soybean | plastid | 18.78 | 15.29 |
| KRH47640 | Soybean | nucleus | 16.24 | 13.79 |
| KRH37526 | Soybean | nucleus, plastid | 17.77 | 13.57 |
| KRH12569 | Soybean | nucleus | 17.77 | 13.57 |
| KRH19346 | Soybean | cytosol | 15.74 | 12.81 |
| KRH06217 | Soybean | nucleus, plastid | 14.72 | 12.61 |
| KRH28201 | Soybean | mitochondrion | 11.68 | 11.33 |
Protein Annotations
| EntrezGene:100306655 | MapMan:15.5.45 | EMBL:ACUP02010309 | InterPro:CCT_CS | EnsemblPlantsGene:GLYMA_17G043700 | GO:GO:0003674 |
| GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:1903507 | GO:GO:2000022 |
| UniProt:I1MS21 | InterPro:IPR010399 | EnsemblPlants:KRH02523 | ProteinID:KRH02523 | ProteinID:KRH02523.1 | PFAM:PF06200 |
| PFAM:PF09425 | PFscan:PS51320 | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | SMART:SM00979 | InterPro:Tify_dom |
| UniParc:UPI00023D512B | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:3239598..3242236
Molecular Weight (calculated)
21469.6 Da
IEP (calculated)
10.381
GRAVY (calculated)
-0.455
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVNPEAGG WKAYPSVMET ALGSSGDGRR GHNMNDDGSV MHFSATRPVA VPSSGQNKVV PSPTQFSILY KGKMCIYEGI PAEKVREIML IASVSAKSAE
101: MKSGIPLTSF IPKSPSSSQG NSTNLPSPQS VKSSIRRLQD EFPLARRQSL QRFLEKRINR LANRSPYALT KKVIHNIDNN FSPDDTPDFG SLNLNFL
101: MKSGIPLTSF IPKSPSSSQG NSTNLPSPQS VKSSIRRLQD EFPLARRQSL QRFLEKRINR LANRSPYALT KKVIHNIDNN FSPDDTPDFG SLNLNFL
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.