Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010178.1-P | |
| Bra022254.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72450.1 | Bra010178.1-P | AT1G32640.1 | 19309455 |
| AT1G72450.1 | Bra022254.1-P | AT3G17860.1 | 19309455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03638 | Canola | nucleus | 72.89 | 72.89 |
| CDY71173 | Canola | nucleus | 65.93 | 66.18 |
| Bra016056.1-P | Field mustard | nucleus | 43.22 | 43.07 |
| AT1G72450.1 | Thale cress | nucleus | 38.46 | 39.03 |
| Bra025977.1-P | Field mustard | nucleus | 32.97 | 35.16 |
| Bra016604.1-P | Field mustard | nucleus | 30.77 | 31.11 |
| Bra030986.1-P | Field mustard | nucleus | 34.07 | 31.1 |
| KRH47640 | Soybean | nucleus | 24.54 | 28.88 |
| KRH06217 | Soybean | nucleus, plastid | 22.71 | 26.96 |
| Bra003778.1-P | Field mustard | cytosol | 21.61 | 26.58 |
| PGSC0003DMT400011155 | Potato | nucleus | 19.41 | 26.5 |
| Bra002338.1-P | Field mustard | cytosol | 18.68 | 25.37 |
| Bra008172.1-P | Field mustard | nucleus | 21.25 | 24.17 |
| Bra015880.1-P | Field mustard | cytosol | 20.51 | 22.86 |
| Bra025713.1-P | Field mustard | plastid | 21.25 | 22.83 |
| Bra016520.1-P | Field mustard | plastid | 21.61 | 22.78 |
| Solyc12g049400.1.1 | Tomato | cytosol | 16.48 | 22.5 |
| Bra031065.1-P | Field mustard | plastid | 21.25 | 21.25 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 21.98 | 20.98 |
| Bra020135.1-P | Field mustard | cytosol | 16.85 | 20.81 |
| Solyc03g122190.2.1 | Tomato | nucleus | 22.71 | 20.06 |
| PGSC0003DMT400058918 | Potato | nucleus | 22.34 | 19.74 |
Protein Annotations
Description
AT1G72450 (E=6e-098) JAZ6, TIFY11B | JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)
Coordinates
chrA02:-:12679494..12680864
Molecular Weight (calculated)
30159.5 Da
IEP (calculated)
9.640
GRAVY (calculated)
-0.836
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGKAPEKS SFSRRCSLFS RYLKEKGNLG NIDIGLSRNL DLELVRKSDL SGQQNEIKKA DISETRPFAL SQKVLVGEAS TSSGGKPRFV DLSEPASLVV
101: PEPGNSQLTI FFRGKVMVYD EFPEDKAKEI MAAAREAHHV AVDSKNTQNL DMNMSNKTNV VIPDLNEPTS SGTNNDDHQT GQQHQVVERI ARRASLHRFF
201: AKRKDRAVAR APYQVNQSGG HLPPKPQKVG PSVESGQPSR QPETPSKPKR HNDASMEVDG EEGRCSKDLE LKL
101: PEPGNSQLTI FFRGKVMVYD EFPEDKAKEI MAAAREAHHV AVDSKNTQNL DMNMSNKTNV VIPDLNEPTS SGTNNDDHQT GQQHQVVERI ARRASLHRFF
201: AKRKDRAVAR APYQVNQSGG HLPPKPQKVG PSVESGQPSR QPETPSKPKR HNDASMEVDG EEGRCSKDLE LKL
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.