Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g122190.2.1 | Tomato | nucleus | 95.15 | 95.15 |
| PGSC0003DMT400011155 | Potato | nucleus | 24.92 | 38.5 |
| PGSC0003DMT400075155 | Potato | nucleus | 23.62 | 33.95 |
| PGSC0003DMT400007592 | Potato | nucleus | 27.18 | 33.07 |
| VIT_09s0002g00890.t01 | Wine grape | nucleus, plastid | 27.83 | 30.07 |
| KRH06217 | Soybean | nucleus, plastid | 22.33 | 30.0 |
| PGSC0003DMT400064125 | Potato | cytosol | 8.41 | 27.96 |
| KRH47640 | Soybean | nucleus | 20.39 | 27.16 |
| AT1G72450.1 | Thale cress | nucleus | 20.06 | 23.05 |
| CDY26248 | Canola | mitochondrion, nucleus | 19.74 | 23.02 |
| CDY71173 | Canola | nucleus | 19.74 | 22.43 |
| CDY03638 | Canola | nucleus | 19.74 | 22.34 |
| Bra008033.1-P | Field mustard | nucleus | 19.74 | 22.34 |
| Bra025977.1-P | Field mustard | nucleus | 18.45 | 22.27 |
| CDX96409 | Canola | nucleus | 19.42 | 21.9 |
| Bra016056.1-P | Field mustard | nucleus | 19.42 | 21.9 |
| CDX72916 | Canola | nucleus | 19.09 | 21.77 |
| CDX96772 | Canola | nucleus | 18.45 | 21.35 |
| Bra030986.1-P | Field mustard | nucleus | 20.39 | 21.07 |
| CDY71875 | Canola | cytosol | 15.21 | 20.89 |
| Bra016604.1-P | Field mustard | nucleus | 18.12 | 20.74 |
| AT1G17380.1 | Thale cress | nucleus | 18.12 | 20.44 |
| CDX81823 | Canola | plastid | 19.74 | 18.37 |
| CDY48300 | Canola | cytosol, mitochondrion, nucleus, vacuole | 17.15 | 18.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058918 | EnsemblPlantsGene:PGSC0003DMG400022888 | EntrezGene:102601108 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | PGSC:PGSC0003DMG400022888 |
| RefSeq:XP_006342934.1 | SEG:seg | SMART:SM00979 | UniParc:UPI000295AFEB | UniProt:M1C3I2 | MapMan:15.5.45 |
Description
Salt responsive protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022888]
Coordinates
chr3:-:61333826..61336162
Molecular Weight (calculated)
33700.6 Da
IEP (calculated)
8.494
GRAVY (calculated)
-0.660
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNLCDGRRR TGDGKAPERS SFVQTCNLLS QFIKGKATIR DLNLGIAGQT EAAGKTETAT MDLLTVMEKP SIDLTKEEHK SVDLVTTESS REKEAAVNEP
101: STSKEAPKEP KAAQLTMFYD GKVIVFDDFP ADKARAVMLL ASKGCHQSSF GTFQTTNIDK INTCTTAPAS LTSNRTDSVA PQQQHLQIKP DSSSAAPQQH
201: KHNLPPLHVC SSTKTDQLKR GSVSSAPLVE QEQHKQIQSQ AAGISSSSEL PIARRSSLHR FLEKRKDRAI VRAPYQVVHN NPLLPSSSNT NGESSSKDSE
301: DQLDLNFKL
101: STSKEAPKEP KAAQLTMFYD GKVIVFDDFP ADKARAVMLL ASKGCHQSSF GTFQTTNIDK INTCTTAPAS LTSNRTDSVA PQQQHLQIKP DSSSAAPQQH
201: KHNLPPLHVC SSTKTDQLKR GSVSSAPLVE QEQHKQIQSQ AAGISSSSEL PIARRSSLHR FLEKRKDRAI VRAPYQVVHN NPLLPSSSNT NGESSSKDSE
301: DQLDLNFKL
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.