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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016056.1-P Field mustard nucleus 100.0 100.0
CDX72916 Canola nucleus 69.71 70.48
CDY71173 Canola nucleus 55.47 55.88
CDY03638 Canola nucleus 53.65 53.85
AT1G72450.1 Thale cress nucleus 49.63 50.56
CDY26248 Canola mitochondrion, nucleus 37.96 39.25
CDY71875 Canola cytosol 30.66 37.33
CDX96772 Canola nucleus 33.94 34.83
CDX81823 Canola plastid 38.69 31.93
CDY48300 Canola cytosol, mitochondrion, nucleus, vacuole 32.12 30.34
CDX85865 Canola cytosol 20.8 25.45
KRH47640 Soybean nucleus 20.8 24.57
Solyc12g049400.1.1 Tomato cytosol 17.52 24.0
PGSC0003DMT400011155 Potato nucleus 17.15 23.5
CDY26697 Canola plastid 21.53 23.32
CDY45408 Canola cytosol 20.8 23.27
CDY41023 Canola plastid 21.53 23.23
CDY37269 Canola nucleus 20.07 22.92
CDY46022 Canola nucleus 20.07 22.92
KRH06217 Soybean nucleus, plastid 18.98 22.61
CDX83781 Canola plastid 21.53 22.35
CDX73127 Canola cytosol 19.71 22.04
CDX96675 Canola plastid 20.07 20.91
VIT_09s0002g00890.t01 Wine grape nucleus, plastid 21.53 20.63
CDY16574 Canola cytoskeleton, cytosol, nucleus 14.96 20.6
CDX68156 Canola cytosol 13.14 19.89
CDX73289 Canola cytosol 13.5 19.68
PGSC0003DMT400058918 Potato nucleus 21.9 19.42
Solyc03g122190.2.1 Tomato nucleus 21.9 19.42
CDY09086 Canola cytosol 15.33 19.0
CDX92427 Canola cytosol 13.87 18.91
CDX81917 Canola plastid 22.26 12.01
CDY21679 Canola plastid 21.9 11.01
Protein Annotations
EnsemblPlants:CDX96409EnsemblPlantsGene:GSBRNA2T00102569001InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_domPANTHER:PTHR33077
PANTHER:PTHR33077:SF5PFAM:PF06200PFAM:PF09425PFscan:PS51320ProteinID:CDX96409ProteinID:CDX96409.1
SEG:segSMART:SM00979UniParc:UPI0002541C39MapMan:15.5.45::
Description
BnaA07g30200D
Coordinates
chrLK031894:-:696285..698412
Molecular Weight (calculated)
30598.0 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.883
Length
274 amino acids
Sequence
(BLAST)
001: MSTGQAPEKS NFNRRCSLLS RYLKEKGSFG DIVIGLARKS DLELAGKNDH RAQQNAIEKA NISESRPFKL TQKQLSVGET SISSRGKAID VVDLSEPRNV
101: PEPKNSQLTI FFGSKVIVYN EFPEDKAKEI IEAAKEANPV AVDSKKTQNH MNLDINISNK SNVVIPDLNE PTSSGNNDDH QTKEQHQVVE RIARRASLHR
201: FFAKRKDRAV ARAPYQVNQN GGHVPPKPQM VGPSVEAGQH SRQPATPSKP QRHNDMSMEV DEEERCSKDL ELKL
Best Arabidopsis Sequence Match ( AT1G72450.1 )
(BLAST)
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.