CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX84081
CDX92171
CDX95810
CDY26910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	CDX73261	AT1G32640.1	19309455
AT1G17380.1	CDX84081	AT1G32640.1	19309455
AT1G17380.1	CDY26910	AT1G32640.1	19309455
AT1G17380.1	CDX92171	AT3G17860.1	19309455
AT1G17380.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26248	Canola	mitochondrion, nucleus	50.9	63.77
Bra030986.1-P	Field mustard	nucleus	47.59	52.84
AT1G17380.1	Thale cress	nucleus	39.46	47.81
CDX72916	Canola	nucleus	37.05	45.39
CDY71875	Canola	cytosol	30.72	45.33
CDX96772	Canola	nucleus	34.64	43.07
CDY03638	Canola	nucleus	33.73	41.03
CDY71173	Canola	nucleus	33.43	40.81
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	34.04	38.97
CDX96409	Canola	nucleus	31.93	38.69
CDX85865	Canola	cytosol	20.18	29.91
CDX68156	Canola	cytosol	15.06	27.62
CDY26697	Canola	plastid	20.48	26.88
CDY46022	Canola	nucleus	19.28	26.67
CDY37269	Canola	nucleus	19.28	26.67
CDY41023	Canola	plastid	20.18	26.38
CDX73127	Canola	cytosol	19.28	26.12
CDY45408	Canola	cytosol	19.28	26.12
KRH47640	Soybean	nucleus	17.77	25.43
CDX96675	Canola	plastid	19.28	24.33
PGSC0003DMT400011155	Potato	nucleus	14.46	24.0
CDX83781	Canola	plastid	18.67	23.48
CDX73289	Canola	cytosol	13.25	23.4
KRH06217	Soybean	nucleus, plastid	15.96	23.04
Solyc12g049400.1.1	Tomato	cytosol	13.55	22.5
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	18.98	22.03
CDY16574	Canola	cytoskeleton, cytosol, nucleus	12.35	20.6
CDY09086	Canola	cytosol	13.25	19.91
CDX92427	Canola	cytosol	12.05	19.9
PGSC0003DMT400058918	Potato	nucleus	18.37	19.74
Solyc03g122190.2.1	Tomato	nucleus	18.37	19.74
CDX81917	Canola	plastid	20.18	13.19
CDY21679	Canola	plastid	20.78	12.66

Protein Annotations

EnsemblPlants:CDX81823	EnsemblPlantsGene:GSBRNA2T00136767001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX81823	ProteinID:CDX81823.1
SEG:seg	SMART:SM00979	UniParc:UPI0004EE121B	MapMan:15.5.45	:	:

Description

BnaC08g37780D

Coordinates

chrLK031826:-:990677..992427

Molecular Weight (calculated)

36809.4 Da

IEP (calculated)

10.126

GRAVY (calculated)

-1.016

Length

332 amino acids

Sequence
(BLAST)

001: MGSTPIPLVL SHSTSKPRTN KKKKKITIKT RKDSGEFLLS DTYKMSRKEN AKALGPPPEK SSFTRRCSLL SRYLKEKGSF GNINLDLIRK PDSDLGLPGY
101: SCPPGKQNAM QKARDSKAEP SPPSGGKAED TNLSKPGSDS GSSQLTIFFG GQVLVYNEFP ADKAKEIMEV AKKAKPVTEV NIQTQINVEN NNTNNIQTQI
201: NVENNNNNKS NMVLPDLNEP TDSMDINPQQ QQENQVVERI ARRASLHRFF AKRKDRAVAR APYQVNQNGG HHHYPPKPET AHGQPLESGQ SSKRPENAVA
301: QTMSHPKPEG DKNTSIKIEE EGQCSKDLEL RL

Best Arabidopsis Sequence Match ( AT1G17380.1 )
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Arabidopsis Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.