CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX74819
CDX84081
CDX92171
CDX93223
CDX93225
CDX95810
CDY07040
CDY07041
CDY20501
CDY24941
CDY26910
CDY60996

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74950.1	CDX73261	AT1G32640.1	19309455
AT1G74950.1	CDX84081	AT1G32640.1	19309455
AT1G74950.1	CDY26910	AT1G32640.1	19309455
AT1G74950.1	CDX74819	AT2G39940.1	18547396
AT1G74950.1	CDX93223	AT2G39940.1	18547396
AT1G74950.1	CDX93225	AT2G39940.1	18547396
AT1G74950.1	CDY07040	AT2G39940.1	18547396
AT1G74950.1	CDY07041	AT2G39940.1	18547396
AT1G74950.1	CDY20501	AT2G39940.1	18547396
AT1G74950.1	CDY24941	AT2G39940.1	18547396
AT1G74950.1	CDY60996	AT2G39940.1	18547396
AT1G74950.1	CDX92171	AT3G17860.1	19309455
AT1G74950.1	CDX95810	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45408	Canola	cytosol	80.41	80.41
CDY46022	Canola	nucleus	69.39	70.83
CDY37269	Canola	nucleus	64.49	65.83
AT1G74950.1	Thale cress	cytosol	58.78	57.83
CDX85865	Canola	cytosol	49.39	54.02
CDX68156	Canola	cytosol	39.18	53.04
CDY26697	Canola	plastid	47.35	45.85
CDY41023	Canola	plastid	47.35	45.67
CDX96675	Canola	plastid	47.35	44.11
CDX83781	Canola	plastid	46.53	43.18
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	40.41	36.94
GSMUA_Achr2P21770_001	Banana	mitochondrion	32.24	35.75
GSMUA_Achr6P31050_001	Banana	cytosol	30.2	34.74
Solyc07g042170.2.1	Tomato	cytosol	30.61	34.72
CDX73289	Canola	cytosol	26.12	34.04
PGSC0003DMT400075155	Potato	nucleus	29.39	33.49
Zm00001d022139_P001	Maize	plastid	31.43	33.05
Os03t0402800-01	Rice	plastid	30.2	32.46
GSMUA_Achr5P22110_001	Banana	mitochondrion	32.24	31.98
EER97533	Sorghum	plastid	30.2	31.49
Solyc12g009220.1.1	Tomato	nucleus	31.84	30.95
GSMUA_Achr3P05920_001	Banana	nucleus	31.43	30.68
PGSC0003DMT400007592	Potato	nucleus	31.43	30.32
TraesCS2D01G176800.1	Wheat	plastid	28.57	30.3
TraesCS2B01G195600.1	Wheat	plastid	28.57	30.3
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.16	30.26
EER92157	Sorghum	plastid	28.16	30.26
GSMUA_Achr9P14370_001	Banana	cytosol	32.65	30.19
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	29.39	29.88
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	28.98	29.71
Os07t0615200-01	Rice	mitochondrion	28.98	29.1
GSMUA_Achr10P...	Banana	cytosol	19.18	29.01
Zm00001d006860_P001	Maize	plastid	31.43	28.95
GSMUA_Achr8P16780_001	Banana	cytosol	29.8	28.85
GSMUA_Achr3P10270_001	Banana	cytosol	26.53	28.76
TraesCS2A01G169300.1	Wheat	plastid	26.94	28.57
EER98969	Sorghum	cytosol	25.71	28.51
GSMUA_Achr11P...	Banana	cytosol	26.53	28.02
GSMUA_AchrUn_...	Banana	nucleus	28.16	27.94
GSMUA_Achr3P02140_001	Banana	mitochondrion	23.67	27.75
GSMUA_Achr7P19850_001	Banana	cytosol	26.94	27.27
TraesCS5D01G219300.2	Wheat	nucleus	24.9	26.52
Zm00001d020614_P001	Maize	cytosol, plastid	23.27	26.15
TraesCS5B01G211000.1	Wheat	nucleus	24.49	26.09
Zm00001d005813_P002	Maize	cytosol, plastid	24.08	25.99
CDX96772	Canola	nucleus	27.76	25.47
Os09t0439200-01	Rice	plastid	23.67	25.0
CDY16574	Canola	cytoskeleton, cytosol, nucleus	20.0	24.62
CDX92427	Canola	cytosol	19.18	23.38
CDX81917	Canola	plastid	47.76	23.03
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	26.94	22.76
CDY21679	Canola	plastid	50.2	22.57
CDY71173	Canola	nucleus	24.9	22.43
GSMUA_Achr1P21870_001	Banana	mitochondrion	32.24	22.38
CDY03638	Canola	nucleus	24.9	22.34
CDY71875	Canola	cytosol	20.41	22.22
CDY09086	Canola	cytosol	20.0	22.17
CDY26248	Canola	mitochondrion, nucleus	23.67	21.89
TraesCS5A01G212800.1	Wheat	plastid	25.31	20.95
CDX72916	Canola	nucleus	22.45	20.3
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	24.08	20.0
CDX96409	Canola	nucleus	22.04	19.71
CDX81823	Canola	plastid	26.12	19.28

Protein Annotations

EnsemblPlants:CDX73127	EnsemblPlantsGene:GSBRNA2T00103599001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDX73127	ProteinID:CDX73127.1
SEG:seg	SMART:SM00979	UniParc:UPI0004EC70EC	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

BnaC06g35750D

Coordinates

chrLK031797:-:2232780..2234396

Molecular Weight (calculated)

27083.9 Da

IEP (calculated)

9.425

GRAVY (calculated)

-0.624

Length

245 amino acids

Sequence
(BLAST)

001: MSRSAECWEF SGERKRLLEK KPSFSQTCSR LSRYLKEKGS FGDLSLGMTC NGVFGVTRQQ PTMMNLFPVE DSSDVKQKND VFPRQSSFSS SSSSGAKEEV
101: EKITENESVK VESQSSAPLT IFYGGQVMVF DDFPAEKAKQ VIDLAHKVSA KSFTAEMNRN QSAYTHKEIA STTPVPVPSP VKTAAPEPIQ THKSSLACEL
201: PIARRASLHR FLEKRKDRIS SKAPYQIDGS TEASSKPNTA WLGSQ

Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)

001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR

Arabidopsis Description

TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.