Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G219300.2 | Wheat | nucleus | 72.64 | 93.48 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 71.96 | 92.61 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 85.47 | 85.76 |
| Os09t0439200-01 | Rice | plastid | 36.82 | 46.98 |
| EER98969 | Sorghum | cytosol | 33.45 | 44.8 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 32.77 | 44.5 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 30.41 | 39.65 |
| GSMUA_Achr10P... | Banana | cytosol | 17.91 | 32.72 |
| TraesCS2A01G169300.1 | Wheat | plastid | 25.0 | 32.03 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 24.32 | 31.86 |
| Solyc07g042170.2.1 | Tomato | cytosol | 22.3 | 30.56 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 27.03 | 30.19 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 21.62 | 30.05 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 25.34 | 29.88 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 24.32 | 29.88 |
| PGSC0003DMT400075155 | Potato | nucleus | 21.62 | 29.77 |
| Bra008172.1-P | Field mustard | nucleus | 22.97 | 28.33 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 23.31 | 27.94 |
| CDY46022 | Canola | nucleus | 22.64 | 27.92 |
| CDY37269 | Canola | nucleus | 22.3 | 27.5 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 24.32 | 26.87 |
| CDX85865 | Canola | cytosol | 20.27 | 26.79 |
| Bra015880.1-P | Field mustard | cytosol | 21.62 | 26.12 |
| CDY45408 | Canola | cytosol | 21.62 | 26.12 |
| AT1G74950.1 | Thale cress | cytosol | 21.62 | 25.7 |
| Bra003778.1-P | Field mustard | cytosol | 19.26 | 25.68 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 20.95 | 25.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.28 | 25.51 |
| Bra016520.1-P | Field mustard | plastid | 22.3 | 25.48 |
| CDX68156 | Canola | cytosol | 15.54 | 25.41 |
| CDX73127 | Canola | cytosol | 20.95 | 25.31 |
| CDY41023 | Canola | plastid | 21.62 | 25.2 |
| Bra025713.1-P | Field mustard | plastid | 21.62 | 25.2 |
| Solyc12g009220.1.1 | Tomato | nucleus | 21.28 | 25.0 |
| CDX83781 | Canola | plastid | 22.3 | 25.0 |
| CDX73289 | Canola | cytosol | 15.88 | 25.0 |
| AT1G19180.1 | Thale cress | cytosol | 21.28 | 24.9 |
| CDY26697 | Canola | plastid | 21.28 | 24.9 |
| CDX96675 | Canola | plastid | 21.96 | 24.71 |
| Bra031065.1-P | Field mustard | plastid | 21.96 | 23.81 |
| PGSC0003DMT400007592 | Potato | nucleus | 20.27 | 23.62 |
| TraesCS2A01G506500.1 | Wheat | cytosol | 15.88 | 23.38 |
| CDX81917 | Canola | plastid | 22.64 | 13.19 |
| CDY21679 | Canola | plastid | 21.96 | 11.93 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G212800.1 | EnsemblPlantsGene:TraesCS5A01G212800 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF12 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:15.5.45 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:427894110..427895666
Molecular Weight (calculated)
30904.8 Da
IEP (calculated)
10.250
GRAVY (calculated)
-0.401
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGRARPGGS LSSHLAVYHE DPIHFKRADA PGRRKSALEL FVGGSRRAKE GARKLAAVER RLGLLCMEGA GSGGKMAGGE GMAGRAGAGA AAAAKEKSGF
101: AATCSLLSRY MKEKKSGALQ GLVGLDMSPP AAVVGEEGAF QPPTTMNLLS GLEEPNAADV EFPLEKSSVG QFLKATTDNQ DAGQDAHQLT IFYGGKVVVV
201: DNFPSTKVKD LFKMANGAGD KAGSSSLVQQ SPPQPAHNTL PDLPIARRNS LHRFLEKRKG RIVAKAPYQI NGSSAAPSKQ ANGDNSWLGL GQEVTN
101: AATCSLLSRY MKEKKSGALQ GLVGLDMSPP AAVVGEEGAF QPPTTMNLLS GLEEPNAADV EFPLEKSSVG QFLKATTDNQ DAGQDAHQLT IFYGGKVVVV
201: DNFPSTKVKD LFKMANGAGD KAGSSSLVQQ SPPQPAHNTL PDLPIARRNS LHRFLEKRKG RIVAKAPYQI NGSSAAPSKQ ANGDNSWLGL GQEVTN
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.