Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G139100.1 | Wheat | nucleus | 87.85 | 88.1 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 74.58 | 74.37 |
| HORVU4Hr1G087520.3 | Barley | plastid | 50.85 | 52.02 |
| Os08t0428400-01 | Rice | nucleus | 35.59 | 29.51 |
| EES15016 | Sorghum | cytosol | 33.05 | 27.34 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 28.25 | 24.04 |
| Zm00001d050365_P006 | Maize | nucleus | 29.66 | 23.97 |
| Bra007937.1-P | Field mustard | nucleus | 16.38 | 23.2 |
| PGSC0003DMT400074101 | Potato | nucleus | 16.1 | 22.53 |
| Solyc03g118540.2.1 | Tomato | cytosol | 20.62 | 22.39 |
| Bra016193.1-P | Field mustard | nucleus | 15.54 | 22.09 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 25.14 | 21.71 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.28 | 21.36 |
| CDX95570 | Canola | plastid | 8.76 | 20.67 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.12 | 20.33 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 23.16 | 19.76 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 22.32 | 19.27 |
| PGSC0003DMT400036790 | Potato | cytosol | 21.19 | 19.23 |
| AT1G70700.3 | Thale cress | cytosol | 14.97 | 19.2 |
| KRH38274 | Soybean | cytosol | 17.23 | 19.12 |
| Solyc01g005440.2.1 | Tomato | cytosol | 16.1 | 18.45 |
| PGSC0003DMT400081778 | Potato | cytosol | 17.51 | 18.34 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 18.93 | 17.45 |
| KRH39044 | Soybean | nucleus | 18.64 | 17.1 |
| Bra022254.1-P | Field mustard | nucleus | 16.1 | 17.01 |
| AT1G48500.1 | Thale cress | nucleus | 14.69 | 16.77 |
| KRH60357 | Soybean | nucleus | 17.51 | 16.71 |
| KRH41663 | Soybean | cytosol | 17.23 | 16.53 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 18.08 | 16.16 |
| AT3G17860.1 | Thale cress | nucleus | 14.97 | 15.06 |
| Bra021281.1-P | Field mustard | nucleus | 14.69 | 14.73 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G364700.1 | EnsemblPlantsGene:TraesCS4B01G364700 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:652966892..652968732
Molecular Weight (calculated)
38028.8 Da
IEP (calculated)
11.131
GRAVY (calculated)
-0.572
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIRSSRHHQ EEATGNLMRP GSDYPPVMQR GGAPAAAAHR RQFQPIPAPF MSFRPPLADT PAPHHQGQLR FHGHGGPRPF HRPPPPPGSF PGAADGTAST
101: AQQRFTADSA SAVYRSAVGV YAPSRRIWNP KSTLMTMFYN GAVNVFDVPV DKAQEIMVLA SRASVSTPPR PTEIQKSGSH VPANTRFTVP DPRKTFATHV
201: SAISSRIPAV PQAPALPRNT PPGYQNYTPD PRTSSGVQSS VAPPVSRASS AQQMQQASPV AVAEPIRPIA VRQSRKASLA RFLEKRKERV SSATPYQLSK
301: SPLESSGSLG SASNSSRLSS ADNAPPNNNC QESMSYVSND AMSAIPHRVV IELE
101: AQQRFTADSA SAVYRSAVGV YAPSRRIWNP KSTLMTMFYN GAVNVFDVPV DKAQEIMVLA SRASVSTPPR PTEIQKSGSH VPANTRFTVP DPRKTFATHV
201: SAISSRIPAV PQAPALPRNT PPGYQNYTPD PRTSSGVQSS VAPPVSRASS AQQMQQASPV AVAEPIRPIA VRQSRKASLA RFLEKRKERV SSATPYQLSK
301: SPLESSGSLG SASNSSRLSS ADNAPPNNNC QESMSYVSND AMSAIPHRVV IELE
001: MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS MSMPGFQSHH YAPGGRSFMN
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.