Factsheet for PGSC0003DMT400081778

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005440.2.1	Tomato	cytosol	83.73	91.59
VIT_01s0011g05560.t01	Wine grape	cytosol	49.7	43.75
KRH38274	Soybean	cytosol	38.46	40.75
KRH60357	Soybean	nucleus	42.6	38.81
KRH41663	Soybean	cytosol	40.83	37.4
PGSC0003DMT400036790	Potato	cytosol	34.02	29.49
PGSC0003DMT400074101	Potato	nucleus	20.41	27.27
GSMUA_Achr9P15630_001	Banana	cytosol	31.66	26.1
GSMUA_Achr5P05900_001	Banana	nucleus	30.77	25.06
GSMUA_Achr7P12530_001	Banana	nucleus	28.11	23.17
TraesCS5A01G204900.1	Wheat	nucleus	26.04	21.52
Os08t0428400-01	Rice	nucleus	26.92	21.31
Zm00001d020409_P002	Maize	nucleus	25.74	21.07
Zm00001d032009_P001	Maize	plastid	8.28	20.9
TraesCS5A01G533100.1	Wheat	nucleus	18.64	20.86
EER98873	Sorghum	nucleus	25.15	20.83
TraesCS5D01G211200.2	Wheat	nucleus	25.74	20.81
TraesCS5B01G203400.2	Wheat	nucleus	25.44	20.67
HORVU5Hr1G060730.3	Barley	plastid	24.56	19.35
Zm00001d050365_P006	Maize	nucleus	24.85	19.18
TraesCSU01G139100.1	Wheat	nucleus	19.82	18.98
HORVU4Hr1G087520.3	Barley	plastid	19.23	18.79
TraesCSU01G139000.1	Wheat	nucleus	19.53	18.33
EES15016	Sorghum	cytosol	22.19	17.52
TraesCS4B01G364700.1	Wheat	nucleus	18.34	17.51
TraesCS5A01G533000.1	Wheat	nucleus	18.34	17.46
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	22.49	14.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400081778	EnsemblPlantsGene:PGSC0003DMG400032119	EntrezGene:102586069	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PGSC:PGSC0003DMG400032119
RefSeq:XP_006354105.1	SMART:SM00979	UniParc:UPI00029511D8	UniProt:M1D521	MapMan:15.5.45	:

Description

Jasmonate ZIM-domain protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400032119]

Coordinates

chr1:+:1010384..1013834

Molecular Weight (calculated)

35762.7 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.265

Length

338 amino acids

Sequence
(BLAST)

001: MERDFMGLNI KDSLAVVKEE PVESSKDSGF RWPMSSKVGV PHFMSLNSAH DENTFKALSA TDGVDAGVKR QSGELQNVHA IHLPYDVKML PFNMNNPSYK
101: THFGGSGQMK QVLGGIPVTA PHSMLPSRGS VAGTTEPWFN SKSCAAPAQL TIFYGGTVNV FEDISPEKAQ AIMFLAGHGC APPNVVQPRF QLQASASKPA
201: AADGVCVNQT PNMLPASGLS SPMSVSSHPI GQSDGSSGNK DDMKMSKTAN SSVTPLVKLD TSKIVTSLGP VGATTIMTAA VPQARKASLA RFLEKRKERV
301: MNLAPYCLSK KSPEYSTPES NGVGFSATSS PLLAGKET

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.