Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032009_P001 | Maize | plastid | 17.44 | 70.15 |
| Zm00001d020409_P002 | Maize | nucleus | 30.06 | 39.23 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 25.23 | 33.25 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 25.42 | 32.93 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 25.23 | 32.54 |
| HORVU5Hr1G060730.3 | Barley | plastid | 24.12 | 30.3 |
| Bra007937.1-P | Field mustard | nucleus | 12.43 | 26.8 |
| KRH38274 | Soybean | cytosol | 15.58 | 26.33 |
| Solyc03g118540.2.1 | Tomato | cytosol | 15.77 | 26.07 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 10.39 | 25.45 |
| AT1G48500.1 | Thale cress | nucleus | 14.47 | 25.16 |
| PGSC0003DMT400074101 | Potato | nucleus | 11.5 | 24.51 |
| Bra016193.1-P | Field mustard | nucleus | 11.32 | 24.5 |
| Zm00001d050365_P006 | Maize | nucleus | 19.85 | 24.43 |
| PGSC0003DMT400036790 | Potato | cytosol | 17.07 | 23.59 |
| Solyc01g005440.2.1 | Tomato | cytosol | 13.36 | 23.3 |
| KRH60357 | Soybean | nucleus | 15.96 | 23.18 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 16.51 | 23.18 |
| Solyc06g068930.1.1 | Tomato | nucleus | 10.58 | 23.17 |
| KRH41663 | Soybean | cytosol | 15.4 | 22.49 |
| PGSC0003DMT400081778 | Potato | cytosol | 14.1 | 22.49 |
| KRH39044 | Soybean | nucleus | 15.21 | 21.24 |
| AT1G70700.3 | Thale cress | cytosol | 10.76 | 21.01 |
| Bra022254.1-P | Field mustard | nucleus | 12.8 | 20.6 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 14.84 | 20.2 |
| Bra021281.1-P | Field mustard | nucleus | 12.8 | 19.55 |
| AT3G17860.1 | Thale cress | nucleus | 12.24 | 18.75 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 13.91 | 18.29 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 13.17 | 17.32 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 12.8 | 16.63 |
Protein Annotations
| EnsemblPlants:Zm00001d005726_P001 | EnsemblPlants:Zm00001d005726_T001 | EnsemblPlantsGene:Zm00001d005726 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:ONM21721.1 |
| SEG:seg | SMART:SM00979 | UniParc:UPI0008443F38 | UniProt:A0A1D6EPM4 | MapMan:15.5.45 | : |
Description
ZIM-transcription factor 15Protein TIFY 6B
Coordinates
chr2:-:184842614..184845272
Molecular Weight (calculated)
57693.1 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.160
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLAAIG KEQQHPRKEK AGGGAEESGR LPRPPFAACR AAFLDLYARR AVLGWVGLGS AHSIRFGEMR LGCAAKFKRP FLSLSLLSYL FIYLFWLCSQ
101: QRVCGLGCHA CRIPSDGRPA VYARFGRELM REKPRWRVAE PFGQPRVSLV DFELPLPLLL LACWWEGRGC LTDPSLAYFG AAAVPAMDWS FASKPCAAPA
201: LMSFRSAARE EPSFPQFSAL DGTKNTAPRM LTHQRSFGPD STQYAALHRA QNGARVVPVS SPFSQSNPMF RVQSSPSLPN STAFKQPPFA ISNAVASSTV
301: GSYGGTRDAV RPRTAQLTIF YAGSVNVFNN VSAEKAQELM FLASRGSSAP VACKPEAPPT LAPAKVTAPE VLLPAKQMLF QKPQHLSPPP SSVPGILQSA
401: ALPRSASSSS NLDSPAPKSS VPLAVPPVSQ APPATLIATT TAAAIMPRAV PQARKASLAR FLEKRKERVT TAAPYPSAKS PLESSDTFGS GSASANANDK
501: SSCTDIALSS NHEESLCLGG QPRSIISFSE ESPSTKLQI
101: QRVCGLGCHA CRIPSDGRPA VYARFGRELM REKPRWRVAE PFGQPRVSLV DFELPLPLLL LACWWEGRGC LTDPSLAYFG AAAVPAMDWS FASKPCAAPA
201: LMSFRSAARE EPSFPQFSAL DGTKNTAPRM LTHQRSFGPD STQYAALHRA QNGARVVPVS SPFSQSNPMF RVQSSPSLPN STAFKQPPFA ISNAVASSTV
301: GSYGGTRDAV RPRTAQLTIF YAGSVNVFNN VSAEKAQELM FLASRGSSAP VACKPEAPPT LAPAKVTAPE VLLPAKQMLF QKPQHLSPPP SSVPGILQSA
401: ALPRSASSSS NLDSPAPKSS VPLAVPPVSQ APPATLIATT TAAAIMPRAV PQARKASLAR FLEKRKERVT TAAPYPSAKS PLESSDTFGS GSASANANDK
501: SSCTDIALSS NHEESLCLGG QPRSIISFSE ESPSTKLQI
001: MFDFKLIIFY SFSFVAPNRG MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS
101: MSMPGFQSHH YAPGGRSFMN NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ
201: VFSPPQTHQQ VVHHTRASVD SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL
301: EKRKERVTSV SPYCLDKKSS TDCRRSMSEC ISSSLSSAT
101: MSMPGFQSHH YAPGGRSFMN NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ
201: VFSPPQTHQQ VVHHTRASVD SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL
301: EKRKERVTSV SPYCLDKKSS TDCRRSMSEC ISSSLSSAT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.