Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98873 | Sorghum | nucleus | 77.24 | 78.19 |
| Zm00001d032009_P001 | Maize | plastid | 17.92 | 55.22 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 53.51 | 54.03 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 52.06 | 51.68 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 52.06 | 51.44 |
| HORVU5Hr1G060730.3 | Barley | plastid | 49.39 | 47.55 |
| Zm00001d050365_P006 | Maize | nucleus | 35.84 | 33.79 |
| Solyc03g118540.2.1 | Tomato | cytosol | 24.21 | 30.67 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 39.23 | 30.06 |
| PGSC0003DMT400074101 | Potato | nucleus | 17.92 | 29.25 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 28.57 | 28.78 |
| AT1G48500.1 | Thale cress | nucleus | 21.07 | 28.06 |
| PGSC0003DMT400036790 | Potato | cytosol | 26.39 | 27.95 |
| KRH38274 | Soybean | cytosol | 21.55 | 27.9 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.36 | 27.56 |
| Solyc06g068930.1.1 | Tomato | nucleus | 15.98 | 26.83 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 14.29 | 26.82 |
| Bra007937.1-P | Field mustard | nucleus | 16.22 | 26.8 |
| Solyc01g005440.2.1 | Tomato | cytosol | 19.85 | 26.54 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 24.46 | 26.3 |
| KRH60357 | Soybean | nucleus | 23.49 | 26.15 |
| PGSC0003DMT400081778 | Potato | cytosol | 21.07 | 25.74 |
| Bra022254.1-P | Field mustard | nucleus | 20.58 | 25.37 |
| KRH41663 | Soybean | cytosol | 22.28 | 24.93 |
| Bra021281.1-P | Field mustard | nucleus | 21.31 | 24.93 |
| Bra016193.1-P | Field mustard | nucleus | 15.01 | 24.9 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 24.94 | 24.82 |
| AT3G17860.1 | Thale cress | nucleus | 20.34 | 23.86 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 22.28 | 23.23 |
| AT1G70700.3 | Thale cress | cytosol | 14.77 | 22.1 |
| KRH39044 | Soybean | nucleus | 19.37 | 20.73 |
Protein Annotations
| EnsemblPlants:Zm00001d020409_P002 | EnsemblPlants:Zm00001d020409_T002 | EnsemblPlantsGene:Zm00001d020409 | EntrezGene:100273108 | InterPro:CCT_CS | InterPro:IPR010399 |
| InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| ProteinID:ONM54875.1 | SEG:seg | SMART:SM00979 | UniParc:UPI00084304E5 | UniProt:A0A1D6I409 | MapMan:15.5.45 |
Description
ZIM-transcription factor 1Protein TIFY 6B
Coordinates
chr7:-:112014245..112017209
Molecular Weight (calculated)
43443.1 Da
IEP (calculated)
10.139
GRAVY (calculated)
-0.296
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSGASFPE SSWMERDFLA AIGKEQQHPH KEEAGAEESE ACVQSLSPAY FGGAGAAAAA PAMDWSFASK PGAAPALMSF RSASFPQFSS FDGAKNPAPR
101: ILTHQRSFGP DSTHYAAAHR TQHALNGARV TPVSSPFNQN SPMFRVQSSP SLPNGTAFKQ PPFAINNNAA ASSTVGFYGT RDVVRPKTAQ LTIFYAGSVN
201: VFDNVSAEKA QELMLLASRG SLPSSAPVAR KPEAPILAPA KVTAPEVLHA TQMLFQKPQH VSPPSSAISK PIPGILQAAS LPRSASSSNL DSPFPKSSVP
301: FPVSPVSQAP RAQPATIAAT TAAAIMPRAV PQARKASLAR FLEKRKERVT TAAPYPSAKS PMESSDTFGS GSANDKSSCT DIALSSNHEE SLCLGQPRNI
401: SFIQESPSTK LQI
101: ILTHQRSFGP DSTHYAAAHR TQHALNGARV TPVSSPFNQN SPMFRVQSSP SLPNGTAFKQ PPFAINNNAA ASSTVGFYGT RDVVRPKTAQ LTIFYAGSVN
201: VFDNVSAEKA QELMLLASRG SLPSSAPVAR KPEAPILAPA KVTAPEVLHA TQMLFQKPQH VSPPSSAISK PIPGILQAAS LPRSASSSNL DSPFPKSSVP
301: FPVSPVSQAP RAQPATIAAT TAAAIMPRAV PQARKASLAR FLEKRKERVT TAAPYPSAKS PMESSDTFGS GSANDKSSCT DIALSSNHEE SLCLGQPRNI
401: SFIQESPSTK LQI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.