Factsheet for AT1G48500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G17860.1	Thale cress	nucleus	46.77	41.19
PGSC0003DMT400074101	Potato	nucleus	23.87	29.25
KRH39044	Soybean	nucleus	35.16	28.24
AT1G70700.3	Thale cress	cytosol	24.84	27.9
Solyc03g118540.2.1	Tomato	cytosol	28.06	26.69
Solyc06g068930.1.1	Tomato	nucleus	20.32	25.61
PGSC0003DMT400036790	Potato	cytosol	31.94	25.38
VIT_17s0000g02230.t01	Wine grape	nucleus	30.0	23.48
EER98873	Sorghum	nucleus	28.71	21.81
Zm00001d032009_P001	Maize	plastid	9.35	21.64
Zm00001d020409_P002	Maize	nucleus	28.06	21.07
GSMUA_Achr7P12530_001	Banana	nucleus	27.1	20.49
GSMUA_Achr9P15630_001	Banana	cytosol	27.1	20.49
Os08t0428400-01	Rice	nucleus	26.77	19.44
TraesCS5A01G204900.1	Wheat	nucleus	25.48	19.32
TraesCS5B01G203400.2	Wheat	nucleus	25.48	18.99
TraesCS5D01G211200.2	Wheat	nucleus	25.48	18.9
GSMUA_Achr5P05900_001	Banana	nucleus	25.16	18.8
EES15016	Sorghum	cytosol	25.48	18.46
HORVU5Hr1G060730.3	Barley	plastid	24.19	17.48
TraesCS5A01G533100.1	Wheat	nucleus	16.77	17.22
Zm00001d050365_P006	Maize	nucleus	24.19	17.12
TraesCSU01G139000.1	Wheat	nucleus	19.03	16.39
TraesCS5A01G533000.1	Wheat	nucleus	18.06	15.77
HORVU4Hr1G087520.3	Barley	plastid	17.1	15.32
TraesCSU01G139100.1	Wheat	nucleus	17.42	15.3
TraesCS4B01G364700.1	Wheat	nucleus	16.77	14.69
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	25.16	14.47

Protein Annotations

MapMan:15.5.45	EntrezGene:841271	UniProt:A0A178WHG6	ProteinID:AAF79697.1	ProteinID:AEE32302.1	ArrayExpress:AT1G48500
EnsemblPlantsGene:AT1G48500	RefSeq:AT1G48500	TAIR:AT1G48500	RefSeq:AT1G48500-TAIR-G	EnsemblPlants:AT1G48500.1	TAIR:AT1G48500.1
EMBL:AY954762	Unigene:At.52076	InterPro:CCT_CS	EMBL:DQ132675	GO:GO:0003674	GO:GO:0003714
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	Symbol:JAZ4
RefSeq:NP_175283.2	ProteinID:OAP16542.1	PFAM:PF06200	PFAM:PF09425	PO:PO:0000293	PFscan:PS51320
PANTHER:PTHR33077	PANTHER:PTHR33077:SF14	UniProt:Q58G47	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI00004ED985

Description

TIFY6AProtein TIFY 6A [Source:UniProtKB/Swiss-Prot;Acc:Q58G47]

Coordinates

chr1:+:17931390..17934662

Molecular Weight (calculated)

33633.9 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.398

Length

310 amino acids

Sequence
(BLAST)

001: MERDFLGLGS KLSPITVKEE TNEDSAPSRG MMDWSFSSKV GSGPQFLSFG TSQQETRVNT VNDHLLSSAA MDQNQRTYFS SLQEDRVFPG SSQQDQTTIT
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERVINV SPYYVDNKSS IDCRTLMSEC
301: VSCPPAHHLH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.