Factsheet for Solyc03g118540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057200.2.1
Solyc01g067460.1.1
Solyc02g065630.2.1
Solyc03g118540.2.1
Solyc03g122190.2.1
Solyc04g015010.2.1
Solyc05g052620.2.1
Solyc06g054570.1.1
Solyc06g060970.1.1
Solyc06g068930.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g076930.1.1
Solyc08g077900.2.1
Solyc08g077910.2.1
Solyc11g012660.1.1
Solyc12g009220.1.1
Solyc12g049400.1.1
Solyc12g098990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48500.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G48500.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G48500.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G48500.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G48500.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G48500.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G48500.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G48500.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT3G17860.1	Solyc03g122190.2.1	AT1G17380.1	19309455
AT3G17860.1	Solyc12g049400.1.1	AT1G17380.1	19309455
AT3G17860.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT3G17860.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT3G17860.1	Solyc08g005050.2.1	AT1G32640.1	17637675
AT3G17860.1	Solyc08g076930.1.1	AT1G32640.1	17637675
AT3G17860.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT3G17860.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT3G17860.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT3G17860.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT3G17860.1	Solyc02g065630.2.1	AT1G67170.1	21798944
AT3G17860.1	Solyc03g122190.2.1	AT1G72450.1	19309455
AT3G17860.1	Solyc12g049400.1.1	AT1G72450.1	19309455
AT3G17860.1	Solyc07g042170.2.1	AT1G74950.1	19309455
AT3G17860.1	Solyc12g009220.1.1	AT1G74950.1	19309455
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	17637675
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	19309455
AT3G17860.1	Solyc01g057200.2.1	AT3G06430.1	21798944
AT3G17860.1	Solyc12g098990.1.1	AT3G06430.1	21798944
AT3G17860.1	Solyc03g118540.2.1	AT3G17860.1	19151223
AT3G17860.1	Solyc06g068930.1.1	AT3G17860.1	19151223
AT3G17860.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT3G17860.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT3G17860.1	Solyc01g067460.1.1	AT4G15700.1	21798944
AT3G17860.1	Solyc06g054570.1.1	AT4G15700.1	21798944
AT3G17860.1	Solyc06g060970.1.1	AT4G17030.1	21798944
AT3G17860.1	Solyc08g077900.2.1	AT4G17030.1	21798944
AT3G17860.1	Solyc08g077910.2.1	AT4G17030.1	21798944
AT3G17860.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT3G17860.1	Solyc11g012660.1.1	AT4G17220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036790	Potato	cytosol	85.28	71.28
Solyc06g068930.1.1	Tomato	nucleus	30.06	39.84
CDY72405	Canola	plastid	15.95	33.55
Solyc01g005440.2.1	Tomato	cytosol	31.6	33.33
AT3G17860.1	Thale cress	nucleus	32.52	30.11
Bra021281.1-P	Field mustard	nucleus	31.6	29.18
CDY18478	Canola	nucleus	31.29	28.9
VIT_17s0000g02230.t01	Wine grape	nucleus	34.66	28.54
KRH39044	Soybean	nucleus	33.74	28.5
Bra022254.1-P	Field mustard	nucleus	29.14	28.36
AT1G48500.1	Thale cress	nucleus	26.69	28.06
CDX95810	Canola	nucleus	28.83	28.06
CDX92171	Canola	nucleus	28.83	27.98
Zm00001d032009_P001	Maize	plastid	10.74	26.12
GSMUA_Achr7P12530_001	Banana	nucleus	31.6	25.12
EER98873	Sorghum	nucleus	30.67	24.51
Zm00001d020409_P002	Maize	nucleus	30.67	24.21
TraesCS5A01G204900.1	Wheat	nucleus	30.37	24.21
GSMUA_Achr9P15630_001	Banana	cytosol	29.75	23.66
TraesCS5B01G203400.2	Wheat	nucleus	29.75	23.32
TraesCS5D01G211200.2	Wheat	nucleus	29.75	23.21
GSMUA_Achr5P05900_001	Banana	nucleus	29.14	22.89
Os08t0428400-01	Rice	nucleus	28.83	22.01
TraesCSU01G139100.1	Wheat	nucleus	22.39	20.68
TraesCS4B01G364700.1	Wheat	nucleus	22.39	20.62
TraesCSU01G139000.1	Wheat	nucleus	22.7	20.56
HORVU5Hr1G060730.3	Barley	plastid	26.99	20.51
TraesCS5A01G533100.1	Wheat	nucleus	18.4	19.87
EES15016	Sorghum	cytosol	25.46	19.39
TraesCS5A01G533000.1	Wheat	nucleus	20.25	18.59
Zm00001d050365_P006	Maize	nucleus	24.85	18.49
HORVU4Hr1G087520.3	Barley	plastid	18.4	17.34
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	26.07	15.77

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4BM05	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF14	SMART:SM00979	EnsemblPlantsGene:Solyc03g118540.2
EnsemblPlants:Solyc03g118540.2.1	InterPro:Tify_dom	UniParc:UPI0002765FAE	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:67430375..67433753

Molecular Weight (calculated)

33979.5 Da

IEP (calculated)

9.184

GRAVY (calculated)

-0.068

Length

326 amino acids

Sequence
(BLAST)

001: MERDFMGLTV KQEVLEEPID PAPLRSSAMQ WSFTNNVTAH PQYLSFKSAP EDKPKIGFDS LASTGLVTIT TTEAVDSSHR TYSDVTQNLI TTVNQLPGAG
101: ALVVSPISAV PSSSIVVGTT DLRGAPKTPP GPAQLTIFYG GSVCVYDNVS PEKAQAIMLL AGNAPPVTPN ATSTLSPVQA PIPKSSAIDS FVVNQCRNTT
201: PTLASPISIT SHGGAQAARV STTTNGVTII KSIGVLPSPS LKAEPSKVTS SVGSFPASLV PSAVPQARKA SLARFLEKRK ERVISASPYP LNSKQSPECS
301: TPELGSRSLS MNSSGSCPPH IISLVK

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.